Metazoan promoters: emerging characteristics and insights into transcriptional regulation
出版年份 2012 全文链接
标题
Metazoan promoters: emerging characteristics and insights into transcriptional regulation
作者
关键词
-
出版物
NATURE REVIEWS GENETICS
Volume 13, Issue 4, Pages 233-245
出版商
Springer Nature
发表日期
2012-03-06
DOI
10.1038/nrg3163
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification
- (2011) Tadasu Nozaki et al. BMC GENOMICS
- Chatting histone modifications in mammals
- (2011) A. Izzo et al. Briefings in Functional Genomics
- In the loop: long range chromatin interactions and gene regulation
- (2011) A. Dean Briefings in Functional Genomics
- Altruistic functions for selfish DNA
- (2011) Geoffrey J. Faulkner et al. CELL CYCLE
- Evolution, biogenesis and function of promoter-associated RNAs
- (2011) Ryan J. Taft et al. CELL CYCLE
- Translational coregulation of 5'TOP mRNAs by TIA-1 and TIAR
- (2011) C. K. Damgaard et al. GENES & DEVELOPMENT
- CpG islands and the regulation of transcription
- (2011) A. M. Deaton et al. GENES & DEVELOPMENT
- Nucleotide composition-linked divergence of vertebrate core promoter architecture
- (2011) S. J. van Heeringen et al. GENOME RESEARCH
- Core promoter T-blocks correlate with gene expression levels in C. elegans
- (2011) V. Grishkevich et al. GENOME RESEARCH
- Unamplified cap analysis of gene expression on a single-molecule sequencer
- (2011) M. Kanamori-Katayama et al. GENOME RESEARCH
- Variety of genomic DNA patterns for nucleosome positioning
- (2011) I. Ioshikhes et al. GENOME RESEARCH
- Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila
- (2011) Filippo M. Cernilogar et al. NATURE
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes
- (2011) Eivind Valen et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters
- (2011) Pascal Preker et al. NUCLEIC ACIDS RESEARCH
- RNA degradome--its biogenesis and functions
- (2011) P. Jackowiak et al. NUCLEIC ACIDS RESEARCH
- Genomic and chromatin signals underlying transcription start-site selection
- (2011) Eivind Valen et al. TRENDS IN GENETICS
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
- (2011) PLOS BIOLOGY
- Transcription Initiation Patterns Indicate Divergent Strategies for Gene Regulation at the Chromatin Level
- (2011) Elizabeth A. Rach et al. PLoS Genetics
- Perspectives on the RNA polymerase II core promoter
- (2011) James T. Kadonaga Wiley Interdisciplinary Reviews-Developmental Biology
- Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation
- (2010) Sergei Nechaev et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- The Language of Histone Crosstalk
- (2010) Jung-Shin Lee et al. CELL
- Comparative Epigenomic Analysis of Murine and Human Adipogenesis
- (2010) Tarjei S. Mikkelsen et al. CELL
- Pausing of RNA Polymerase II Disrupts DNA-Specified Nucleosome Organization to Enable Precise Gene Regulation
- (2010) Daniel A. Gilchrist et al. CELL
- RNA Dust: Where are the Genes?
- (2010) P. Carninci DNA RESEARCH
- BRG1 helps RNA polymerase II to overcome a nucleosomal barrier during elongation, in vivo
- (2010) Alicia Subtil-Rodríguez et al. EMBO REPORTS
- The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery
- (2010) T. J. Parry et al. GENES & DEVELOPMENT
- Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome
- (2010) T. R. Mercer et al. GENOME RESEARCH
- Genome-wide analysis of promoter architecture in Drosophila melanogaster
- (2010) R. A. Hoskins et al. GENOME RESEARCH
- A systems approach to analyze transcription factors in mammalian cells
- (2010) Eric Soler et al. METHODS
- Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
- (2010) Peter V. Kharchenko et al. NATURE
- Discovery and characterization of chromatin states for systematic annotation of the human genome
- (2010) Jason Ernst et al. NATURE BIOTECHNOLOGY
- Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
- (2010) Charles Plessy et al. NATURE METHODS
- A paired-end sequencing strategy to map the complex landscape of transcription initiation
- (2010) Ting Ni et al. NATURE METHODS
- Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans
- (2010) Ryan J Taft et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- One-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex
- (2010) T. J. Gries et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gene Positioning
- (2010) C. Ferrai et al. Cold Spring Harbor Perspectives in Biology
- Chromosome Territories
- (2010) T. Cremer et al. Cold Spring Harbor Perspectives in Biology
- Poised Transcription Factories Prime Silent uPA Gene Prior to Activation
- (2010) Carmelo Ferrai et al. PLOS BIOLOGY
- Replication and Active Demethylation Represent Partially Overlapping Mechanisms for Erasure of H3K4me3 in Budding Yeast
- (2010) Marta Radman-Livaja et al. PLoS Genetics
- Alternative Epigenetic Chromatin States of Polycomb Target Genes
- (2010) Yuri B. Schwartz et al. PLoS Genetics
- Control of Inducible Gene Expression by Signal-Dependent Transcriptional Elongation
- (2009) Diana C. Hargreaves et al. CELL
- A Unifying Model for the Selective Regulation of Inducible Transcription by CpG Islands and Nucleosome Remodeling
- (2009) Vladimir R. Ramirez-Carrozzi et al. CELL
- Promoting developmental transcription
- (2009) U. Ohler et al. DEVELOPMENT
- Endogenous retroviral LTRs as promoters for human genes: A critical assessment
- (2009) Carla J. Cohen et al. GENE
- Gene Looping Is Conferred by Activator-dependent Interaction of Transcription Initiation and Termination Machineries
- (2009) Belal El Kaderi et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Progression through the RNA Polymerase II CTD Cycle
- (2009) Stephen Buratowski MOLECULAR CELL
- Genomic views of distant-acting enhancers
- (2009) Axel Visel et al. NATURE
- Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs
- (2009) NATURE
- Tiny RNAs associated with transcription start sites in animals
- (2009) Ryan J Taft et al. NATURE GENETICS
- The regulated retrotransposon transcriptome of mammalian cells
- (2009) Geoffrey J Faulkner et al. NATURE GENETICS
- The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs
- (2009) Alain Jacquier NATURE REVIEWS GENETICS
- Nucleosome positioning and gene regulation: advances through genomics
- (2009) Cizhong Jiang et al. NATURE REVIEWS GENETICS
- CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses
- (2009) Helge G. Roider et al. NUCLEIC ACIDS RESEARCH
- Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis
- (2009) Yoshiharu Y. Yamamoto et al. PLANT JOURNAL
- Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II in Drosophila
- (2009) S. Nechaev et al. SCIENCE
- Re-capping the message
- (2009) Daniel R. Schoenberg et al. TRENDS IN BIOCHEMICAL SCIENCES
- Transcriptional features of genomic regulatory blocks
- (2009) Altuna Akalin et al. GENOME BIOLOGY
- Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome
- (2009) Elizabeth A Rach et al. GENOME BIOLOGY
- Hidden layers of human small RNAs
- (2008) Hideya Kawaji et al. BMC GENOMICS
- NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly
- (2008) D. A. Gilchrist et al. GENES & DEVELOPMENT
- Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
- (2008) E. Valen et al. GENOME RESEARCH
- Transcription-Dependent Gene Looping of the HIV-1 Provirus Is Dictated by Recognition of Pre-mRNA Processing Signals
- (2008) Kelly J. Perkins et al. MOLECULAR CELL
- Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
- (2008) Lars Guelen et al. NATURE
- Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
- (2008) D. A. Hendrix et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dynamic interactions between the promoter and terminator regions of the mammalianBRCA1gene
- (2008) Sue Mei Tan-Wong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Divergent Transcription from Active Promoters
- (2008) Amy C. Seila et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
- The Insulator Binding Protein CTCF Positions 20 Nucleosomes around Its Binding Sites across the Human Genome
- (2008) Yutao Fu et al. PLoS Genetics
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now