Engineering a ribozyme cleavage-induced split fluorescent aptamer complementation assay

Dual-colour imaging of RNAs using quencher- and fluorophore-binding aptamers

(2015) Ankita Arora et al.   NUCLEIC ACIDS RESEARCH

Toehold Switches: De-Novo-Designed Regulators of Gene Expression

(2014) Alexander A. Green et al.   CELL

The Expanding View of RNA and DNA Function

(2014) Ronald R. Breaker et al.   CHEMISTRY & BIOLOGY

A G-quadruplex–containing RNA activates fluorescence in a GFP-like fluorophore

(2014) Hao Huang et al.   Nature Chemical Biology

A general design strategy for protein-responsive riboswitches in mammalian cells

(2014) Simon Ausländer et al.   NATURE METHODS

Structural basis for activity of highly efficient RNA mimics of green fluorescent protein

(2014) Katherine Deigan Warner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Design and application of cotranscriptional non-enzymatic RNA circuits and signal transducers

(2014) Sanchita Bhadra et al.   NUCLEIC ACIDS RESEARCH

A Spinach molecular beacon triggered by strand displacement

(2014) Sanchita Bhadra et al.   RNA

RNA Signal Amplifier Circuit with Integrated Fluorescence Output

(2014) Farhima Akter et al.   ACS Synthetic Biology

Fluorescent Monitoring of RNA Assembly and Processing Using the Split-Spinach Aptamer

(2014) Tucker A. Rogers et al.   ACS Synthetic Biology

A widespread self-cleaving ribozyme class is revealed by bioinformatics

(2013) Adam Roth et al.   Nature Chemical Biology

Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria

(2013) Rita L Strack et al.   Nature Protocols

Engineered riboswitches: Expanding researchers' toolbox with synthetic RNA regulators

(2012) Alexander Wittmann et al.   FEBS LETTERS

A versatile cis-blocking and trans-activation strategy for ribozyme characterization

(2012) Andrew B. Kennedy et al.   NUCLEIC ACIDS RESEARCH

De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells

(2012) G. Rodrigo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selection of tetracycline inducible self-cleaving ribozymes as synthetic devices for gene regulation in yeast

(2011) Alexander Wittmann et al.   Molecular BioSystems

Rational design of a small molecule-responsive intramer controlling transgene expression in mammalian cells

(2011) David Ausländer et al.   NUCLEIC ACIDS RESEARCH

RNA Mimics of Green Fluorescent Protein

(2011) J. S. Paige et al.   SCIENCE

Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations

(2011) Jonathan Perreault et al.   PLoS Computational Biology

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression

(2010) Simon Ausländer et al.   Molecular BioSystems

Long-range tertiary interactions in single hammerhead ribozymes bias motional sampling toward catalytically active conformations

(2010) S. E. McDowell et al.   RNA

The Chemical Biology of Aptamers

(2009) Günter Mayer   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Self-Sustained Replication of an RNA Enzyme

(2009) T. A. Lincoln et al.   SCIENCE

Improved Aptazyme Design and In Vivo Screening Enable Riboswitching in Bacteria

(2008) Markus Wieland et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Synthetic biology with RNA motifs

(2008) Hirohide Saito et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY