Automated Neuron Tracing Methods: An Updated Account

From DIADEM to BigNeuron

(2015) Hanchuan Peng et al.   NEUROINFORMATICS

A Pipeline for Neuron Reconstruction Based on Spatial Sliding Volume Filter Seeding

(2014) Dong Sui et al.   Computational and Mathematical Methods in Medicine

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Extensible visualization and analysis for multidimensional images using Vaa3D

(2014) Hanchuan Peng et al.   Nature Protocols

Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis

(2014) Hanchuan Peng et al.   Nature Communications

Active learning of neuron morphology for accurate automated tracing of neurites

(2014) Rohan Gala et al.   Frontiers in Neuroanatomy

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree

(2013) Hang Xiao et al.   BIOINFORMATICS

A distance-field based automatic neuron tracing method

(2013) Jinzhu Yang et al.   BMC BIOINFORMATICS

Structural and molecular interrogation of intact biological systems

(2013) Kwanghun Chung et al.   NATURE

Neuronal Morphology Goes Digital: A Research Hub for Cellular and System Neuroscience

(2013) Ruchi Parekh et al.   NEURON

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain

(2012) L. Silvestri et al.   OPTICS EXPRESS

Automatic Reconstruction of Neural Morphologies with Multi-Scale Tracking

(2012) Anna Choromanska et al.   Frontiers in Neural Circuits

High-throughput Computer Method for 3D Neuronal Structure Reconstruction from the Image Stack of the Drosophila Brain and Its Applications

(2012) Ping-Chang Lee et al.   PLoS Computational Biology

Neuromantic – from Semi-Manual to Semi-Automatic Reconstruction of Neuron Morphology

(2012) Darren R. Myatt et al.   Frontiers in Neuroinformatics

Automatic 3D neuron tracing using all-path pruning

(2011) H. Peng et al.   BIOINFORMATICS

Principal Curves as Skeletons of Tubular Objects

(2011) Erhan Bas et al.   NEUROINFORMATICS

A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake

(2011) Yu Wang et al.   NEUROINFORMATICS

Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models

(2011) Ting Zhao et al.   NEUROINFORMATICS

Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors

(2011) Engin Türetken et al.   NEUROINFORMATICS

Automated Tracing of Neurites from Light Microscopy Stacks of Images

(2011) Paarth Chothani et al.   NEUROINFORMATICS

The DIADEM Metric: Comparing Multiple Reconstructions of the Same Neuron

(2011) Todd A. Gillette et al.   NEUROINFORMATICS

The DIADEM and Beyond

(2011) Yuan Liu   NEUROINFORMATICS

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

Automated reconstruction of neuronal morphology: An overview

(2010) Duncan E. Donohue et al.   BRAIN RESEARCH REVIEWS

Neuron tracing in perspective

(2010) Erik Meijering   CYTOMETRY PART A

The human brain in numbers: a linearly scaled-up primate brain

(2009) Suzana Herculano-Houzel   Frontiers in Human Neuroscience

MDL Constrained 3-D Grayscale Skeletonization Algorithm for Automated Extraction of Dendrites and Spines from Fluorescence Confocal Images

(2009) Xiaosong Yuan et al.   NEUROINFORMATICS

Detection of the optimal neuron traces in confocal microscopy images

(2008) Zlatko Vasilkoski et al.   JOURNAL OF NEUROSCIENCE METHODS

Neuroinformatics Grand Challenges

(2008) Giorgio A. Ascoli   NEUROINFORMATICS