APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree

A distance-field based automatic neuron tracing method

(2013) Jinzhu Yang et al.   BMC BIOINFORMATICS

Cozzarelli Prize Winner: Eight pairs of descending visual neurons in the dragonfly give wing motor centers accurate population vector of prey direction

(2012) P. T. Gonzalez-Bellido et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automatic Reconstruction of Neural Morphologies with Multi-Scale Tracking

(2012) Anna Choromanska et al.   Frontiers in Neural Circuits

Automatic 3D neuron tracing using all-path pruning

(2011) H. Peng et al.   BIOINFORMATICS

Drosophila Brainbow: a recombinase-based fluorescence labeling technique to subdivide neural expression patterns

(2011) Stefanie Hampel et al.   NATURE METHODS

The DIADEM Data Sets: Representative Light Microscopy Images of Neuronal Morphology to Advance Automation of Digital Reconstructions

(2011) Kerry M. Brown et al.   NEUROINFORMATICS

3-D Image Pre-processing Algorithms for Improved Automated Tracing of Neuronal Arbors

(2011) Arunachalam Narayanaswamy et al.   NEUROINFORMATICS

A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake

(2011) Yu Wang et al.   NEUROINFORMATICS

Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models

(2011) Ting Zhao et al.   NEUROINFORMATICS

DIADEMchallenge.Org: A Compendium of Resources Fostering the Continuous Development of Automated Neuronal Reconstruction

(2011) Todd A. Gillette et al.   NEUROINFORMATICS

Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model

(2010) H. Peng et al.   BIOINFORMATICS

Automated reconstruction of neuronal morphology: An overview

(2010) Duncan E. Donohue et al.   BRAIN RESEARCH REVIEWS

Neuron tracing in perspective

(2010) Erik Meijering   CYTOMETRY PART A

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

Semi-Automated Reconstruction of Neural Processes from Large Numbers of Fluorescence Images

(2009) Ju Lu et al.   PLoS One

Automated Three-Dimensional Detection and Shape Classification of Dendritic Spines from Fluorescence Microscopy Images

(2008) Alfredo Rodriguez et al.   PLoS One