Analysis of gut microbiome, host genetics, and plasma metabolites reveals gut microbiome-host interactions in the Japanese population
出版年份 2023 全文链接
标题
Analysis of gut microbiome, host genetics, and plasma metabolites reveals gut microbiome-host interactions in the Japanese population
作者
关键词
-
出版物
Cell Reports
Volume -, Issue -, Pages 113324
出版商
Elsevier BV
发表日期
2023-11-06
DOI
10.1016/j.celrep.2023.113324
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Reconstruction of the personal information from human genome reads in gut metagenome sequencing data
- (2023) Yoshihiko Tomofuji et al. Nature Microbiology
- Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
- (2022) Youwen Qin et al. NATURE GENETICS
- Mendelian randomization analyses support causal relationships between blood metabolites and the gut microbiome
- (2022) Xiaomin Liu et al. NATURE GENETICS
- Challenges and future directions for studying effects of host genetics on the gut microbiome
- (2022) Serena Sanna et al. NATURE GENETICS
- Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project
- (2022) Esteban A. Lopera-Maya et al. NATURE GENETICS
- Gut microbiota-derived bile acids in intestinal immunity, inflammation, and tumorigenesis
- (2022) Jie Cai et al. Cell Host & Microbe
- ABO genotype alters the gut microbiota by regulating GalNAc levels in pigs
- (2022) Hui Yang et al. NATURE
- Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals
- (2022) Aysu Okbay et al. NATURE GENETICS
- An online atlas of human plasma metabolite signatures of gut microbiome composition
- (2022) Koen F. Dekkers et al. Nature Communications
- Genetic diversity fuels gene discovery for tobacco and alcohol use
- (2022) Gretchen R. B. Saunders et al. NATURE
- Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome
- (2021) Malte Christoph Rühlemann et al. NATURE GENETICS
- Large-scale association analyses identify host factors influencing human gut microbiome composition
- (2021) Alexander Kurilshikov et al. NATURE GENETICS
- Human ABO Blood Groups and Their Associations with Different Diseases
- (2021) Silamlak Birhanu Abegaz Biomed Research International
- Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis
- (2021) Saori Sakaue et al. Nature Communications
- Large-scale plasma-metabolome analysis identifies potential biomarkers of psoriasis and its clinical subtypes
- (2021) Toshihiro Kishikawa et al. JOURNAL OF DERMATOLOGICAL SCIENCE
- Metagenome-wide association study revealed disease-specific landscape of the gut microbiome of systemic lupus erythematosus in Japanese
- (2021) Yoshihiko Tomofuji et al. ANNALS OF THE RHEUMATIC DISEASES
- Whole gut virome analysis of 476 Japanese revealed a link between phage and autoimmune disease
- (2021) Yoshihiko Tomofuji et al. ANNALS OF THE RHEUMATIC DISEASES
- Genetic architecture of microRNA expression and its link to complex diseases in the Japanese population
- (2021) Kyuto Sonehara et al. HUMAN MOLECULAR GENETICS
- A cross-population atlas of genetic associations for 220 human phenotypes
- (2021) Saori Sakaue et al. NATURE GENETICS
- Dysbiosis-Induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation
- (2020) Sidhartha R. Sinha et al. Cell Host & Microbe
- Genome-wide associations of human gut microbiome variation and implications for causal inference analyses
- (2020) David A. Hughes et al. Nature Microbiology
- A Metagenome-Wide Association Study of Gut Microbiome in Patients With Multiple Sclerosis Revealed Novel Disease Pathology
- (2020) Toshihiro Kishikawa et al. Frontiers in Cellular and Infection Microbiology
- Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota
- (2020) Sachiko Ishida et al. Communications Biology
- 1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses
- (2019) Yuanqiang Zou et al. NATURE BIOTECHNOLOGY
- A human gut bacterial genome and culture collection for improved metagenomic analyses
- (2019) Samuel C. Forster et al. NATURE BIOTECHNOLOGY
- A new genomic blueprint of the human gut microbiota
- (2019) Alexandre Almeida et al. NATURE
- Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
- (2019) Jason Lloyd-Price et al. NATURE
- Blood metabolome predicts gut microbiome α-diversity in humans
- (2019) Tomasz Wilmanski et al. NATURE BIOTECHNOLOGY
- A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals
- (2019) Petar Scepanovic et al. Microbiome
- Metagenome-wide association study of gut microbiome revealed novel aetiology of rheumatoid arthritis in the Japanese population
- (2019) Toshihiro Kishikawa et al. ANNALS OF THE RHEUMATIC DISEASES
- Characterizing rare and low-frequency height-associated variants in the Japanese population
- (2019) Masato Akiyama et al. Nature Communications
- Interplay between the human gut microbiome and host metabolism
- (2019) Alessia Visconti et al. Nature Communications
- Accurate, scalable and integrative haplotype estimation
- (2019) Olivier Delaneau et al. Nature Communications
- Relationship between gut microbiota and circulating metabolites in population-based cohorts
- (2019) Dina Vojinovic et al. Nature Communications
- Deep whole-genome sequencing reveals recent selection signatures linked to evolution and disease risk of Japanese
- (2018) Yukinori Okada et al. Nature Communications
- A One-Penny Imputed Genome from Next-Generation Reference Panels
- (2018) Brian L. Browning et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Environment dominates over host genetics in shaping human gut microbiota
- (2018) Daphna Rothschild et al. NATURE
- Leveraging Polygenic Functional Enrichment to Improve GWAS Power
- (2018) Gleb Kichaev et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Gut microbiome structure and metabolic activity in inflammatory bowel disease
- (2018) Eric A. Franzosa et al. Nature Microbiology
- MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
- (2017) Martin Steinegger et al. NATURE BIOTECHNOLOGY
- The gut microbiome in atherosclerotic cardiovascular disease
- (2017) Zhuye Jie et al. Nature Communications
- Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study
- (2016) Toshitaka Odamaki et al. BMC MICROBIOLOGY
- Genetic Determinants of the Gut Microbiome in UK Twins
- (2016) Julia K. Goodrich et al. Cell Host & Microbe
- The gut microbiome of healthy Japanese and its microbial and functional uniqueness
- (2016) Suguru Nishijima et al. DNA RESEARCH
- The effect of host genetics on the gut microbiome
- (2016) Marc Jan Bonder et al. NATURE GENETICS
- Dysbiosis Contributes to Arthritis Development via Activation of Autoreactive T Cells in the Intestine
- (2016) Yuichi Maeda et al. Arthritis & Rheumatology
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment
- (2015) Xuan Zhang et al. NATURE MEDICINE
- Second-generation PLINK: rising to the challenge of larger and richer datasets
- (2015) Christopher C Chang et al. GigaScience
- minimac2: faster genotype imputation
- (2014) Christian Fuchsberger et al. BIOINFORMATICS
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics
- (2014) Claudia Giambartolomei et al. PLoS Genetics
- GSVA: gene set variation analysis for microarray and RNA-Seq data
- (2013) Sonja Hänzelmann et al. BMC BIOINFORMATICS
- Gut Microbiota Composition and Activity in Relation to Host Metabolic Phenotype and Disease Risk
- (2012) Elaine Holmes et al. Cell Metabolism
- A metagenome-wide association study of gut microbiota in type 2 diabetes
- (2012) Junjie Qin et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
- (2012) Oliver Stegle et al. Nature Protocols
- Symptomatic atherosclerosis is associated with an altered gut metagenome
- (2012) Fredrik H. Karlsson et al. Nature Communications
- Random-Effects Model Aimed at Discovering Associations in Meta-Analysis of Genome-wide Association Studies
- (2011) Buhm Han et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- ABO blood group alleles and the risk of pancreatic cancer in a Japanese population
- (2011) Makoto Nakao et al. CANCER SCIENCE
- LocusZoom: regional visualization of genome-wide association scan results
- (2010) R. J. Pruim et al. BIOINFORMATICS
- Inhibiting the Initiation of Clostridium difficile Spore Germination using Analogs of Chenodeoxycholic Acid, a Bile Acid
- (2010) J. A. Sorg et al. JOURNAL OF BACTERIOLOGY
- Ab initio gene identification in metagenomic sequences
- (2010) Wenhan Zhu et al. NUCLEIC ACIDS RESEARCH
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles
- (2009) Masahiro Sugimoto et al. Metabolomics
- Phosphodiesterase 1C is dispensable for rapid response termination of olfactory sensory neurons
- (2009) Katherine D Cygnar et al. NATURE NEUROSCIENCE
- Bile Salts and Glycine as Cogerminants for Clostridium difficile Spores
- (2008) J. A. Sorg et al. JOURNAL OF BACTERIOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started