Spatial transcriptomics reveals light-induced chlorenchyma cells involved in promoting shoot regeneration in tomato callus

High-resolution anatomical and spatial transcriptome analyses reveal two types of meristematic cell pools within the secondary vascular tissue of poplar stem

(2023) Juan Du et al.   Molecular Plant

Mapping transcriptomic vector fields of single cells

(2022) Xiaojie Qiu et al.   CELL

HY5 inhibits in vitro shoot stem cell niches initiation via directly repressing pluripotency and cytokinin pathways

(2022) Xuehuan Dai et al.   PLANT JOURNAL

The single-cell stereo-seq reveals region-specific cell subtypes and transcriptome profiling in Arabidopsis leaves

(2022) Keke Xia et al.   DEVELOPMENTAL CELL

Progress in Soybean Genetic Transformation Over the Last Decade

(2022) Hu Xu et al.   Frontiers in Plant Science

Mechanical conflict caused by a cell-wall-loosening enzyme activates de novo shoot regeneration

(2022) Vijina Varapparambath et al.   DEVELOPMENTAL CELL

Glucose-driven TOR–FIE–PRC2 signalling controls plant development

(2022) Ruiqiang Ye et al.   NATURE

A spatiotemporal atlas of organogenesis in the development of orchid flowers

(2022) Chang Liu et al.   NUCLEIC ACIDS RESEARCH

Molecular mechanism of cytokinin-activated cell division in Arabidopsis

(2021) Weibing Yang et al.   SCIENCE

Phloem unloading via the apoplastic pathway is essential for shoot distribution of root-synthesized cytokinins

(2021) Jiangzhe Zhao et al.   PLANT PHYSIOLOGY

Integrated analysis of multimodal single-cell data

(2021) Yuhan Hao et al.   CELL

Nitrogen assimilation in plants: current status and future prospects

(2021) Xiujie Liu et al.   Journal of Genetics and Genomics

Molecular Mechanisms of Plant Regeneration

(2019) Momoko Ikeuchi et al.   Annual Review of Plant Biology

De novo shoot organogenesis during plant regeneration

(2019) Jinwoo Shin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Shoot regeneration: a journey from acquisition of competence to completion

(2018) Dhanya Radhakrishnan et al.   CURRENT OPINION IN PLANT BIOLOGY

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration

(2017) Tian-Qi Zhang et al.   PLANT CELL

Differential TOR activation and cell proliferation inArabidopsisroot and shoot apexes

(2017) Xiaojuan Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development inArabidopsis

(2017) Yan O. Zubo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photosynthesis-dependent H2O2 transfer from chloroplasts to nuclei provides a high-light signalling mechanism

(2017) Marino Exposito-Rodriguez et al.   Nature Communications

PLETHORA Genes Control Regeneration by a Two-Step Mechanism

(2015) Abdul Kareem et al.   CURRENT BIOLOGY

Arabidopsis ABCG14 is essential for the root-to-shoot translocation of cytokinin

(2014) D. Ko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maize transformation technology development for commercial event generation

(2014) Qiudeng Que et al.   Frontiers in Plant Science

Glucose–TOR signalling reprograms the transcriptome and activates meristems

(2013) Yan Xiong et al.   NATURE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

The shoot regeneration capacity of excised Arabidopsis cotyledons is established during the initial hours after injury and is modulated by a complex genetic network of light signalling

(2012) BLAIR NAMETH et al.   PLANT CELL AND ENVIRONMENT

Arabidopsis ENHANCER OF SHOOT REGENERATION (ESR)1 and ESR2 regulate in vitro shoot regeneration and their expressions are differentially regulated

(2011) Naoki Matsuo et al.   PLANT SCIENCE

Signalling cascades integrating light-enhanced nitrate metabolism

(2008) Cathrine Lillo   BIOCHEMICAL JOURNAL

Pluripotency of Arabidopsis xylem pericycle underlies shoot regeneration from root and hypocotyl explants grownin vitro

(2008) Ramzy Atta et al.   PLANT JOURNAL