The single-cell stereo-seq reveals region-specific cell subtypes and transcriptome profiling in Arabidopsis leaves

A single-cell analysis of the Arabidopsis vegetative shoot apex

(2021) Tian-Qi Zhang et al.   DEVELOPMENTAL CELL

Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf

(2021) Camila B. Lopez-Anido et al.   DEVELOPMENTAL CELL

RNA‐seq analysis of laser micro‐dissected Arabidopsis thaliana leaf epidermis, mesophyll and vasculature defines tissue‐specific transcriptional responses to multiple stress treatments

(2021) Oliver Berkowitz et al.   PLANT JOURNAL

Integrated analysis of multimodal single-cell data

(2021) Yuhan Hao et al.   CELL

Seamless integration of image and molecular analysis for spatial transcriptomics workflows

(2020) Joseph Bergenstråhle et al.   BMC GENOMICS

Global Dynamic Molecular Profiling of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing

(2020) Zhixin Liu et al.   Molecular Plant

Differential Regulation of Arabidopsis PP2C-D1 by SAUR17 and SAUR50 in Apical Hook Development and Cotyledon Opening

(2020) Jiajun Wang et al.   PLANT CELL

High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue

(2020) Yang Liu et al.   CELL

Single-Cell Transcriptome Analysis in Plants: Advances and Challenges

(2020) Rahul Shaw et al.   Molecular Plant

Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2

(2020) Robert R. Stickels et al.   NATURE BIOTECHNOLOGY

A gene expression map of shoot domains reveals regulatory mechanisms

(2019) Caihuan Tian et al.   Nature Communications

Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation

(2019) Minoru Kubo et al.   NUCLEIC ACIDS RESEARCH

Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+

(2019) Chee-Huat Linus Eng et al.   NATURE

Towards Building a Plant Cell Atlas

(2019) Seung Y. Rhee et al.   TRENDS IN PLANT SCIENCE

Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression

(2019) Chenglong Xia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-Cell Transcriptomics: A High-Resolution Avenue for Plant Functional Genomics

(2019) Charlotte Rich-Griffin et al.   TRENDS IN PLANT SCIENCE

Getting leaves into shape: a molecular, cellular, environmental and evolutionary view

(2018) Aude Maugarny-Calès et al.   DEVELOPMENT

Three-dimensional intact-tissue sequencing of single-cell transcriptional states

(2018) Xiao Wang et al.   SCIENCE

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Chlorophyll b in angiosperms: Functions in photosynthesis, signaling and ontogenetic regulation

(2015) O.V. Voitsekhovskaja et al.   JOURNAL OF PLANT PHYSIOLOGY

Proteasome targeting of proteins in Arabidopsis leaf mesophyll, epidermal and vascular tissues

(2015) Julia Svozil et al.   Frontiers in Plant Science

Sucrose Metabolism: Gateway to Diverse Carbon Use and Sugar Signaling

(2014) Yong-Ling Ruan   Annual Review of Plant Biology

Highly Multiplexed Subcellular RNA Sequencing in Situ

(2014) J. H. Lee et al.   SCIENCE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY