Glucose-driven TOR–FIE–PRC2 signalling controls plant development

Dynamic Nutrient Signaling Networks in Plants

(2021) Lei Li et al.   Annual Review of Cell and Developmental Biology

Digital paradigm for Polycomb epigenetic switching and memory

(2021) Govind Menon et al.   CURRENT OPINION IN PLANT BIOLOGY

PRC2 activity, recruitment, and silencing: a comparative perspective

(2021) Tomasz Bieluszewski et al.   TRENDS IN PLANT SCIENCE

Transcriptional regulation of strigolactone signalling in Arabidopsis

(2020) Lei Wang et al.   NATURE

Temperature-dependent growth contributes to long-term cold sensing

(2020) Yusheng Zhao et al.   NATURE

Proteomics and phosphoproteomics revealed molecular networks of stomatal immune responses

(2020) Qiuying Pang et al.   PLANTA

An Update on the Signals Controlling Shoot Branching

(2019) Francois F. Barbier et al.   TRENDS IN PLANT SCIENCE

Integration of nutrient, energy, light and hormone signalling via TOR in plants

(2019) Yue Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing

(2019) Tom Denyer et al.   DEVELOPMENTAL CELL

Target of Rapamycin kinase: central regulatory hub for plant growth and metabolism

(2019) Lyubov A Ryabova et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mutations of the AtYAK1 Kinase Suppress TOR Deficiency in Arabidopsis

(2019) Céline Forzani et al.   Cell Reports

TOR signaling in plants: conservation and innovation

(2018) Lin Shi et al.   DEVELOPMENT

Telobox motifs recruit CLF/SWN–PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis

(2018) Yue Zhou et al.   NATURE GENETICS

The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis

(2018) Yan Yang et al.   PLoS Genetics

Phosphorylation of Ribosomal Protein RPS6 Integrates Light Signals and Circadian Clock Signals

(2018) Ramya Enganti et al.   Frontiers in Plant Science

Regulation of Division and Differentiation of Plant Stem Cells

(2018) Edith Pierre-Jerome et al.   Annual Review of Cell and Developmental Biology

A proximity-tagging system to identify membrane protein–protein interactions

(2018) Qiang Liu et al.   NATURE METHODS

TOR and RPS6 transmit light signals to enhance protein translation in deetiolating Arabidopsis seedlings

(2018) Guan-Hong Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discovery of nitrate–CPK–NLP signalling in central nutrient–growth networks

(2017) Kun-hsiang Liu et al.   NATURE

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis

(2017) Jun Xiao et al.   NATURE GENETICS

The interplay of epigenetic marks during stem cell differentiation and development

(2017) Yaser Atlasi et al.   NATURE REVIEWS GENETICS

Differential TOR activation and cell proliferation inArabidopsisroot and shoot apexes

(2017) Xiaojuan Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct phases of Polycomb silencing to hold epigenetic memory of cold inArabidopsis

(2017) Hongchun Yang et al.   SCIENCE

TOR Signaling and Nutrient Sensing

(2016) Thomas Dobrenel et al.   Annual Review of Plant Biology

FIE, a nuclear PRC2 protein, forms cytoplasmic complexes inArabidopsis thaliana

(2016) Moran Oliva et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation

(2016) Miguel de Lucas et al.   PLANT CELL

Arabidopsis transcriptional repressor VAL1 triggers Polycomb silencing at FLC during vernalization

(2016) Julia I. Qüesta et al.   SCIENCE

Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements

(2016) Hua Wang et al.   PLoS Genetics

The Polycomb Group Protein Regulatory Network

(2015) Iva Mozgova et al.   Annual Review of Plant Biology

Plant developmental transitions: the role of microRNAs and sugars

(2015) Sha Yu et al.   CURRENT OPINION IN PLANT BIOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

PcG and trxG in plants – friends or foes

(2015) Li Pu et al.   TRENDS IN GENETICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Generation and purification of highly specific antibodies for detecting post-translationally modified proteins in vivo

(2014) Swathi Arur et al.   Nature Protocols

Selective Methylation of Histone H3 Variant H3.1 Regulates Heterochromatin Replication

(2014) Y. Jacob et al.   SCIENCE

Quantitative ChIP-Seq Normalization Reveals Global Modulation of the Epigenome

(2014) David A. Orlando et al.   Cell Reports

Characterization of Torin2, an ATP-Competitive Inhibitor of mTOR, ATM, and ATR

(2013) Q. Liu et al.   CANCER RESEARCH

ATP-competitive mTOR kinase inhibitors delay plant growth by triggering early differentiation of meristematic cells but no developmental patterning change

(2013) Marie-Hélène Montané et al.   JOURNAL OF EXPERIMENTAL BOTANY

Glucose–TOR signalling reprograms the transcriptome and activates meristems

(2013) Yan Xiong et al.   NATURE

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

Comprehensive Protein-Based Artificial MicroRNA Screens for Effective Gene Silencing in Plants

(2013) Jian-Feng Li et al.   PLANT CELL

FLOWERING LOCUS C in monocots and the tandem origin of angiosperm-specific MADS-box genes

(2013) Philip Ruelens et al.   Nature Communications

Selective ATP-Competitive Inhibitors of TOR Suppress Rapamycin-Insensitive Function of TORC2 in Saccharomyces cerevisiae

(2012) Qingsong Liu et al.   ACS Chemical Biology

Plant Stem Cell Niches

(2012) Ernst Aichinger et al.   Annual Review of Plant Biology

Kinome-wide Selectivity Profiling of ATP-competitive Mammalian Target of Rapamycin (mTOR) Inhibitors and Characterization of Their Binding Kinetics

(2012) Qingsong Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cytoplasmic Assembly and Selective Nuclear Import of Arabidopsis ARGONAUTE4/siRNA Complexes

(2012) Ruiqiang Ye et al.   MOLECULAR CELL

The translational landscape of mTOR signalling steers cancer initiation and metastasis

(2012) Andrew C. Hsieh et al.   NATURE

Template-based protein structure modeling using the RaptorX web server

(2012) Morten Källberg et al.   Nature Protocols

Mutations in the Arabidopsis Homolog of LST8/G L, a Partner of the Target of Rapamycin Kinase, Impair Plant Growth, Flowering, and Metabolic Adaptation to Long Days

(2012) M. Moreau et al.   PLANT CELL

Target of Rapamycin Signaling Regulates Metabolism, Growth, and Life Span in Arabidopsis

(2012) M. Ren et al.   PLANT CELL

Systemic analysis of inducible target of rapamycin mutants reveal a general metabolic switch controlling growth inArabidopsis thaliana

(2012) Camila Caldana et al.   PLANT JOURNAL

Rapamycin and Glucose-Target of Rapamycin (TOR) Protein Signaling in Plants

(2011) Yan Xiong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Discovery of 9-(6-Aminopyridin-3-yl)-1-(3-(trifluoromethyl)phenyl)benzo[h][1,6]naphthyridin-2(1H)-one (Torin2) as a Potent, Selective, and Orally Available Mammalian Target of Rapamycin (mTOR) Inhibitor for Treatment of Cancer

(2011) Qingsong Liu et al.   JOURNAL OF MEDICINAL CHEMISTRY

A Polycomb-based switch underlying quantitative epigenetic memory

(2011) Andrew Angel et al.   NATURE

Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase Transition

(2011) Daniel Bouyer et al.   PLoS Genetics

Characterization of PF-4708671, a novel and highly specific inhibitor of p70 ribosomal S6 kinase (S6K1)

(2010) Laura R. Pearce et al.   BIOCHEMICAL JOURNAL

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

Coming into bloom: the specification of floral meristems

(2009) C. Liu et al.   DEVELOPMENT

Role of the polycomb protein EED in the propagation of repressive histone marks

(2009) Raphael Margueron et al.   NATURE

Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana

(2008) Jalean Joyanne Petricka et al.   PLANT JOURNAL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY