标题
Shotgun microbial profiling of fossil remains
作者
关键词
-
出版物
MOLECULAR ECOLOGY
Volume 23, Issue 7, Pages 1780-1798
出版商
Wiley
发表日期
2014-02-12
DOI
10.1111/mec.12690
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX
- (2014) Mikkel Schubert et al. Nature Protocols
- Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries
- (2013) Meredith L. Carpenter et al. AMERICAN JOURNAL OF HUMAN GENETICS
- mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
- (2013) Hákon Jónsson et al. BIOINFORMATICS
- Computational meta'omics for microbial community studies
- (2013) N. Segata et al. Molecular Systems Biology
- Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
- (2013) Ludovic Orlando et al. NATURE
- Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions
- (2013) Christina J Adler et al. NATURE GENETICS
- No Ancient DNA Damage in Actinobacteria from the Neanderthal Bone
- (2013) Katarzyna Zaremba-Niedźwiedzka et al. PLoS One
- The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition
- (2013) Embriette R. Hyde et al. PLoS One
- Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes
- (2013) Andaine Seguin-Orlando et al. PLoS One
- Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
- (2013) J. Dabney et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae
- (2013) V. J. Schuenemann et al. SCIENCE
- Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
- (2013) Michael D. Martin et al. Nature Communications
- A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
- (2013) Jessica L Metcalf et al. eLife
- Improving the performance of True Single Molecule Sequencing for ancient DNA
- (2012) Aurelien Ginolhac et al. BMC GENOMICS
- Improving ancient DNA read mapping against modern reference genomes
- (2012) Mikkel Schubert et al. BMC GENOMICS
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The UCSC Genome Browser database: extensions and updates 2013
- (2012) Laurence R. Meyer et al. NUCLEIC ACIDS RESEARCH
- Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA
- (2012) Susanna Sawyer et al. PLoS One
- Insights from Characterizing Extinct Human Gut Microbiomes
- (2012) Raul Y. Tito et al. PLoS One
- Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
- (2012) N. Fierer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genotype of a historic strain of Mycobacterium tuberculosis
- (2012) A. S. Bouwman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils
- (2012) M. E. Allentoft et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe
- (2012) P. Skoglund et al. SCIENCE
- A High-Coverage Genome Sequence from an Archaic Denisovan Individual
- (2012) M. Meyer et al. SCIENCE
- New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
- (2012) Andreas Keller et al. Nature Communications
- DNA in ancient bone – Where is it located and how should we extract it?
- (2011) Paula F. Campos et al. ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER
- mapDamage: testing for damage patterns in ancient DNA sequences
- (2011) Aurelien Ginolhac et al. BIOINFORMATICS
- True single-molecule DNA sequencing of a pleistocene horse bone
- (2011) L. Orlando et al. GENOME RESEARCH
- A draft genome of Yersinia pestis from victims of the Black Death
- (2011) Kirsten I. Bos et al. NATURE
- Molecular Identification of Bacteria by Total Sequence Screening: Determining the Cause of Death in Ancient Human Subjects
- (2011) Catherine Thèves et al. PLoS One
- Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death
- (2011) V. J. Schuenemann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metagenomic biomarker discovery and explanation
- (2011) Nicola Segata et al. GENOME BIOLOGY
- Genetic history of an archaic hominin group from Denisova Cave in Siberia
- (2010) David Reich et al. NATURE
- Ancient human genome sequence of an extinct Palaeo-Eskimo
- (2010) Morten Rasmussen et al. NATURE
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
- (2010) H. A. Burbano et al. SCIENCE
- A Draft Sequence of the Neandertal Genome
- (2010) R. E. Green et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- PyNAST: a flexible tool for aligning sequences to a template alignment
- (2009) J. G. Caporaso et al. BIOINFORMATICS
- New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains
- (2009) Carsten Schwarz et al. NUCLEIC ACIDS RESEARCH
- Revising the recent evolutionary history of equids using ancient DNA
- (2009) L. Orlando et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse
- (2009) C. M. Wade et al. SCIENCE
- Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes
- (2009) A. W. Briggs et al. SCIENCE
- Sequencing the nuclear genome of the extinct woolly mammoth
- (2008) Webb Miller et al. NATURE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started