Conservation genomics of natural and managed populations: building a conceptual and practical framework
出版年份 2016 全文链接
标题
Conservation genomics of natural and managed populations: building a conceptual and practical framework
作者
关键词
-
出版物
MOLECULAR ECOLOGY
Volume 25, Issue 13, Pages 2967-2977
出版商
Wiley
发表日期
2016-04-17
DOI
10.1111/mec.13647
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Controlling false discoveries in genome scans for selection
- (2016) Olivier François et al. MOLECULAR ECOLOGY
- The programstructuredoes not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem
- (2016) Sebastien J. Puechmaille Molecular Ecology Resources
- Harnessing the power of RADseq for ecological and evolutionary genomics
- (2016) Kimberly R. Andrews et al. NATURE REVIEWS GENETICS
- Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application
- (2016) Brittany A. Garner et al. TRENDS IN ECOLOGY & EVOLUTION
- Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST
- (2015) Michael C. Whitlock et al. AMERICAN NATURALIST
- Pollux: platform independent error correction of single and mixed genomes
- (2015) Eric Marinier et al. BMC BIOINFORMATICS
- Transcriptomic response to heat stress among ecologically divergent populations of redband trout
- (2015) Shawn R Narum et al. BMC GENOMICS
- Denoising DNA deep sequencing data—high-throughput sequencing errors and their correction
- (2015) David Laehnemann et al. BRIEFINGS IN BIOINFORMATICS
- Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing
- (2015) Brian K. Hand et al. Current Zoology
- Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era
- (2015) Pierre-Alexandre Gagnaire et al. Evolutionary Applications
- RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping
- (2015) O. A. Ali et al. GENETICS
- Effects of Crossovers Between Homeologs on Inheritance and Population Genomics in Polyploid-Derived Salmonid Fishes
- (2015) F. W. Allendorf et al. JOURNAL OF HEREDITY
- RAD sequencing reveals within-generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels
- (2015) M. Laporte et al. MOLECULAR ECOLOGY
- A practical guide to environmental association analysis in landscape genomics
- (2015) Christian Rellstab et al. MOLECULAR ECOLOGY
- The impact of selection, gene flow and demographic history on heterogeneous genomic divergence: three-spine sticklebacks in divergent environments
- (2015) Anne-Laure Ferchaud et al. MOLECULAR ECOLOGY
- Targeted capture in evolutionary and ecological genomics
- (2015) Matthew R. Jones et al. MOLECULAR ECOLOGY
- The relative power of genome scans to detect local adaptation depends on sampling design and statistical method
- (2015) Katie E. Lotterhos et al. MOLECULAR ECOLOGY
- RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus)
- (2015) Laura Benestan et al. MOLECULAR ECOLOGY
- The past, present and future of genomic scans for selection
- (2015) Jeffrey D. Jensen et al. MOLECULAR ECOLOGY
- Exploring linkage disequilibrium
- (2015) Stuart J. E. Baird Molecular Ecology Resources
- Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure
- (2015) Petri Kemppainen et al. Molecular Ecology Resources
- Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)
- (2015) R. K. Waples et al. Molecular Ecology Resources
- Genomics and the challenging translation into conservation practice
- (2015) Aaron B.A. Shafer et al. TRENDS IN ECOLOGY & EVOLUTION
- Landscape community genomics: understanding eco-evolutionary processes in complex environments
- (2015) Brian K. Hand et al. TRENDS IN ECOLOGY & EVOLUTION
- Where Next for Genetics and Genomics?
- (2015) Chris Tyler-Smith et al. PLOS BIOLOGY
- Genome-Wide Association Analysis of Adaptation Using Environmentally Predicted Traits
- (2015) Joost van Heerwaarden et al. PLoS Genetics
- Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing
- (2015) Brian K. Hand et al. Current Zoology
- Degenerate adaptor sequences for detecting PCR duplicates in reduced representation sequencing data improve genotype calling accuracy
- (2015) M. M. Y. Tin et al. Molecular Ecology Resources
- Widespread Signals of Convergent Adaptation to High Altitude in Asia and America
- (2014) Matthieu Foll et al. AMERICAN JOURNAL OF HUMAN GENETICS
- PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
- (2014) Deren A. R. Eaton BIOINFORMATICS
- BAYSIC: a Bayesian method for combining sets of genome variants with improved specificity and sensitivity
- (2014) Brandi L Cantarel et al. BMC BIOINFORMATICS
- ANGSD: Analysis of Next Generation Sequencing Data
- (2014) Thorfinn Sand Korneliussen et al. BMC BIOINFORMATICS
- A low-density SNP array for analyzing differential selection in freshwater and marine populations of threespine stickleback (Gasterosteus aculeatus)
- (2014) Anne-Laure Ferchaud et al. BMC GENOMICS
- How and why should we implement genomics into conservation?
- (2014) Barry J. McMahon et al. Evolutionary Applications
- Using genomics to characterize evolutionary potential for conservation of wild populations
- (2014) Katherine A. Harrisson et al. Evolutionary Applications
- Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)
- (2014) Wesley A. Larson et al. Evolutionary Applications
- Population-Genetic Inference from Pooled-Sequencing Data
- (2014) Michael Lynch et al. Genome Biology and Evolution
- Testing for Hardy–Weinberg Proportions: Have We Lost the Plot?
- (2014) Robin S. Waples JOURNAL OF HEREDITY
- Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence inRestio capensis(Restionaceae)
- (2014) C. Lexer et al. MOLECULAR ECOLOGY
- Demystifying the RAD fad
- (2014) Jonathan B. Puritz et al. MOLECULAR ECOLOGY
- Genome scan methods against more complex models: when and how much should we trust them?
- (2014) Pierre de Villemereuil et al. MOLECULAR ECOLOGY
- Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference
- (2014) A. Mastretta-Yanes et al. Molecular Ecology Resources
- Sequencing depth and coverage: key considerations in genomic analyses
- (2014) David Sims et al. NATURE REVIEWS GENETICS
- Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh)
- (2014) Luca Bianco et al. PLoS One
- A Dense Linkage Map for Chinook salmon ( Oncorhynchus tshawytscha ) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event
- (2014) Marine S. O. Brieuc et al. G3-Genes Genomes Genetics
- Comparative Mapping Between Coho Salmon (Oncorhynchus kisutch) and Three Other Salmonids Suggests a Role for Chromosomal Rearrangements in the Retention of Duplicated Regions Following a Whole Genome Duplication Event
- (2014) M. Kodama et al. G3-Genes Genomes Genetics
- dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms
- (2014) Jonathan B. Puritz et al. PeerJ
- Comparing a few SNP calling algorithms using low-coverage sequencing data
- (2013) Xiaoqing Yu et al. BMC BIOINFORMATICS
- LANDSCAPE GENOMICS IN ATLANTIC SALMON (SALMO SALAR): SEARCHING FOR GENE-ENVIRONMENT INTERACTIONS DRIVING LOCAL ADAPTATION
- (2013) Bourret Vincent et al. EVOLUTION
- Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models
- (2013) Eric Frichot et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing
- (2013) Paul A. Hohenlohe et al. MOLECULAR ECOLOGY
- Population genomics from pool sequencing
- (2013) Luca Ferretti et al. MOLECULAR ECOLOGY
- Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations
- (2013) Stéphane De Mita et al. MOLECULAR ECOLOGY
- Genotyping-by-sequencing in ecological and conservation genomics
- (2013) Shawn R. Narum et al. MOLECULAR ECOLOGY
- Stacks: an analysis tool set for population genomics
- (2013) Julian Catchen et al. MOLECULAR ECOLOGY
- Revisiting comparisons of genetic diversity in stable and declining species: assessing genome-wide polymorphism in North American bumble bees using RAD sequencing
- (2013) J. D. Lozier MOLECULAR ECOLOGY
- A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel
- (2013) J. M. Pujolar et al. Molecular Ecology Resources
- Genomic basis for coral resilience to climate change
- (2013) Daniel J. Barshis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome sequencing and population genomics in non-model organisms
- (2013) Hans Ellegren TRENDS IN ECOLOGY & EVOLUTION
- Uninformative polymorphisms bias genome scans for signatures of selection
- (2012) Marius Roesti et al. BMC EVOLUTIONARY BIOLOGY
- Genomic resources for a model in adaptation and speciation research: characterization of the Poecilia mexicana transcriptome
- (2012) Joanna L Kelley et al. BMC GENOMICS
- The effects of inheritance in tetraploids on genetic diversity and population divergence
- (2012) P G Meirmans et al. HEREDITY
- Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)
- (2012) MORTEN T. LIMBORG et al. MOLECULAR ECOLOGY
- Special features of RAD Sequencing data: implications for genotyping
- (2012) John W. Davey et al. MOLECULAR ECOLOGY
- Population genomics based on low coverage sequencing: how low should we go?
- (2012) C. Alex Buerkle et al. MOLECULAR ECOLOGY
- Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the programstructure
- (2012) Kimberly J. Gilbert et al. MOLECULAR ECOLOGY
- Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species
- (2012) Jon E. Hess et al. MOLECULAR ECOLOGY
- The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis
- (2012) Pierre De Wit et al. Molecular Ecology Resources
- Next-generation sequencing data interpretation: enhancing reproducibility and accessibility
- (2012) Anton Nekrutenko et al. NATURE REVIEWS GENETICS
- Harnessing genomics for delineating conservation units
- (2012) W. Chris Funk et al. TRENDS IN ECOLOGY & EVOLUTION
- Estimation of allele frequency and association mapping using next-generation sequencing data
- (2011) Su Kim et al. BMC BIOINFORMATICS
- Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication
- (2011) Angel Amores et al. GENETICS
- Fine-scale population structure and riverscape genetics of brook trout (Salvelinus fontinalis) distributed continuously along headwater channel networks
- (2011) YOICHIRO KANNO et al. MOLECULAR ECOLOGY
- A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
- (2011) MICHAEL R. MILLER et al. MOLECULAR ECOLOGY
- Comparison ofFSToutlier tests for SNP loci under selection
- (2011) SHAWN R. NARUM et al. Molecular Ecology Resources
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Genotype and SNP calling from next-generation sequencing data
- (2011) Rasmus Nielsen et al. NATURE REVIEWS GENETICS
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- Molecular spandrels: tests of adaptation at the genetic level
- (2011) Rowan D. H. Barrett et al. NATURE REVIEWS GENETICS
- Linkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism
- (2011) Simon W. Baxter et al. PLoS One
- Signatures of natural selection among lineages and habitats inOncorhynchus mykiss
- (2011) Morten T. Limborg et al. Ecology and Evolution
- High quality SNP calling using Illumina data at shallow coverage
- (2010) N. Malhis et al. BIOINFORMATICS
- Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
- (2010) Thibaut Jombart et al. BMC GENETICS
- To Pool, or Not to Pool?
- (2010) David J. Cutler et al. GENETICS
- The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
- (2010) Andreas Futschik et al. GENETICS
- SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
- (2010) S. Q. Le et al. GENOME RESEARCH
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing
- (2010) Peng Cui et al. GENOMICS
- The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure
- (2010) S T Kalinowski HEREDITY
- Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
- (2010) LAURENT EXCOFFIER et al. Molecular Ecology Resources
- Genomics and the future of conservation genetics
- (2010) Fred W. Allendorf et al. NATURE REVIEWS GENETICS
- Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature
- (2010) I. R. Bradbury et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Adaptation genomics: the next generation
- (2010) Jessica Stapley et al. TRENDS IN ECOLOGY & EVOLUTION
- Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
- (2010) Paul A. Hohenlohe et al. PLoS Genetics
- An essay on the necessity and feasibility of conservation genomics
- (2009) N. Joop Ouborg et al. CONSERVATION GENETICS
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Using spatial Bayesian methods to determine the genetic structure of a continuously distributed population: clusters or isolation by distance?
- (2009) A. C. Frantz et al. JOURNAL OF APPLIED ECOLOGY
- A new method for estimating effective population sizes from a single sample of multilocus genotypes
- (2009) JINLIANG WANG MOLECULAR ECOLOGY
- LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method
- (2008) Tiago Antao et al. BMC BIOINFORMATICS
- Estimation of effective number of breeders from molecular coancestry of single cohort sample
- (2008) Tetsuro Nomura Evolutionary Applications
- A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
- (2008) M. Foll et al. GENETICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started