Local endemism and within-island diversification of shrews illustrate the importance of speciation in building Sundaland mammal diversity

A new genus and species of omnivorous rodent (Muridae: Murinae) from Sulawesi, nested within a clade of endemic carnivores

(2016) Kevin C. Rowe et al.   JOURNAL OF MAMMALOGY

Phylogeography of vertebrates on the Sunda Shelf: a multi-species comparison

(2015) Jennifer A. Leonard et al.   JOURNAL OF BIOGEOGRAPHY

Complex history of isolation and gene flow in hoary, Olympic, and endangered Vancouver Island marmots

(2015) Nicholas J. Kerhoulas et al.   JOURNAL OF MAMMALOGY

A hog-nosed shrew rat (Rodentia: Muridae) from Sulawesi Island, Indonesia

(2015) Jacob A. Esselstyn et al.   JOURNAL OF MAMMALOGY

Seven common mistakes in population genetics and how to avoid them

(2015) Patrick G. Meirmans   MOLECULAR ECOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Evolution of endemism on a young tropical mountain

(2015) Vincent S. F. T. Merckx et al.   NATURE

Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles

(2015) Terrence C. Demos et al.   PLoS One

Predicting the conservation status of data-deficient species

(2014) Lucie M. Bland et al.   CONSERVATION BIOLOGY

Testing diversification models of endemic Philippine forest mice (Apomys) with nuclear phylogenies across elevational gradients reveals repeated colonization of isolated mountain ranges

(2014) Rebecca Justiniano et al.   JOURNAL OF BIOGEOGRAPHY

A new species of shrew (Soricomorpha:Crocidura) from West Java, Indonesia

(2014) Jacob A. Esselstyn et al.   JOURNAL OF MAMMALOGY

Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci

(2014) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Historical distribution of Sundaland’s Dipterocarp rainforests at Quaternary glacial maxima

(2014) Niels Raes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Borneo and Indochina are Major Evolutionary Hotspots for Southeast Asian Biodiversity

(2014) M. de Bruyn et al.   SYSTEMATIC BIOLOGY

Integrative taxonomy within theHylomyscus denniaecomplex (Rodentia: Muridae) and a new species from Kenya

(2013) Terrence C. Demos et al.   JOURNAL OF MAMMALOGY

Morphological and genetic relationships of the Crocidura monticola species complex (Soricidae: Crocidurinae) in Sundaland

(2013) Hasmahzaiti Omar et al.   MAMMALIAN BIOLOGY

Carving out turf in a biodiversity hotspot: multiple, previously unrecognized shrew species co-occur on Java Island, Indonesia

(2013) Jacob A. Esselstyn et al.   MOLECULAR ECOLOGY

A molecular phylogeny of Asian barbets: Speciation and extinction in the tropics

(2013) Robert-Jan den Tex et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Hidden diversity in the Andes: Comparison of species delimitation methods in montane marsupials

(2013) Thomas C. Giarla et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Uncovering cryptic diversity and refugial persistence among small mammal lineages across the Eastern Afromontane biodiversity hotspot

(2013) Terrence C. Demos et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Bones and genes: resolution problems in three Vietnamese species of Crocidura (Mammalia, Soricomorpha, Soricidae) and the description of an additional new species

(2013) Paula Jenkins et al.   ZooKeys

Evolutionary novelty in a rat with no molars

(2012) J. A. Esselstyn et al.   Biology Letters

THE BIOGEOGRAPHY OF SULAWESI REVISITED: IS THERE EVIDENCE FOR A VICARIANT ORIGIN OF TAXA ON WALLACE'S “ANOMALOUS ISLAND”?

(2012) Björn Stelbrink et al.   EVOLUTION

SPECIES DELIMITATION WITH ABC AND OTHER COALESCENT-BASED METHODS: A TEST OF ACCURACY WITH SIMULATIONS AND AN EMPIRICAL EXAMPLE WITH LIZARDS OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE)

(2012) Arley Camargo et al.   EVOLUTION

Mentawai’s endemic, relictual fauna: is it evidence for Pleistocene extinctions on Sumatra?

(2012) Andreas Wilting et al.   JOURNAL OF BIOGEOGRAPHY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Understanding bias in geographic range size estimates

(2011) Seema N. Sheth et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Molecular phylogeny of treeshrews (Mammalia: Scandentia) and the timescale of diversification in Southeast Asia

(2011) Trina E. Roberts et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Speciation at the Mogollon Rim in the Arizona Mountain Kingsnake (Lampropeltis pyromelana)

(2011) Frank T. Burbrink et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion

(2011) Hong Gao et al.   PLoS One

Evaluation of a Bayesian Coalescent Method of Species Delimitation

(2011) Chi Zhang et al.   SYSTEMATIC BIOLOGY

Overcoming the Linnean shortfall: Data deficiency and biological survey priorities

(2010) Daniel Brito   BASIC AND APPLIED ECOLOGY

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation

(2010) Ryan C Garrick et al.   BMC EVOLUTIONARY BIOLOGY

Integrating phylogenetic and taxonomic evidence illuminates complex biogeographic patterns along Huxley’s modification of Wallace’s Line

(2010) Jacob A. Esselstyn et al.   JOURNAL OF BIOGEOGRAPHY

New species of shrew (Soricidae: Crocidura) from Sibuyan Island, Philippines

(2010) Jacob A. Esselstyn et al.   JOURNAL OF MAMMALOGY

Genetic structure of Gymnures (genus Hylomys; Erinaceidae) on continental islands of Southeast Asia: historical effects of fragmentation

(2010) M. Ruedi et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)

(2010) A. D. Leache et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Late quaternary turnover of mammals in Borneo: the zooarchaeological record

(2009) Earl of Cranbrook   BIODIVERSITY AND CONSERVATION

Southeast Asia's changing palaeogeography

(2009) R. Hall   BLUMEA

Chapter 10. Descriptions of New Species of Crocidura (Soricomorpha: Soricidae) from Mainland Southeast Asia, with Synopses of Previously Described Species and Remarks on Biogeography

(2009) Paulina D Jenkins et al.   BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY

DO GEOLOGICAL OR CLIMATIC PROCESSES DRIVE SPECIATION IN DYNAMIC ARCHIPELAGOS? THE TEMPO AND MODE OF DIVERSIFICATION IN SOUTHEAST ASIAN SHREWS

(2009) Jacob A. Esselstyn et al.   EVOLUTION

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

An information-theoretical approach to phylogeography

(2009) BRYAN C. CARSTENS et al.   MOLECULAR ECOLOGY

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments

(2009) J-F. FLOT   Molecular Ecology Resources

Origin and diversification of Philippine bulbuls

(2009) Carl H. Oliveros et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Niches, body sizes, and the disassembly of mammal communities on the Sunda Shelf islands

(2009) J. G. Okie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The current refugial rainforests of Sundaland are unrepresentative of their biogeographic past and highly vulnerable to disturbance

(2009) C. H. Cannon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The first evidence for the past presence of the tiger Panthera tigris (L.) on the island of Palawan, Philippines: Extinction in an island population

(2008) Philip J. Piper et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY