Sequence variation in nuclear ribosomal small subunit, internal transcribed spacer and large subunit regions ofRhizophagus irregularisandGigaspora margaritais high and isolate-dependent

Data processing can mask biology: towards better reporting of fungal barcoding data?

(2016) Marc-André Selosse et al.   NEW PHYTOLOGIST

The invisible dimension of fungal diversity

(2016) David Hibbett   SCIENCE

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system

(2016) Patrick D. Schloss et al.   PeerJ

Evidence for the sexual origin of heterokaryosis in arbuscular mycorrhizal fungi

(2016) Jeanne Ropars et al.   Nature Microbiology

Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life

(2015) Bryn T. M. Dentinger et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Genome diversity in arbuscular mycorrhizal fungi

(2015) J Peter W Young   CURRENT OPINION IN PLANT BIOLOGY

A conserved arbuscular mycorrhizal fungal core-species community colonizes potato roots in the Andes

(2015) Carolina Senés-Guerrero et al.   FUNGAL DIVERSITY

Molecular operational taxonomic units as approximations of species in the light of evolutionary models and empirical data from Fungi

(2015) Martin Ryberg   MOLECULAR ECOLOGY

Navigating the labyrinth: a guide to sequence-based, community ecology of arbuscular mycorrhizal fungi

(2015) Miranda M. Hart et al.   NEW PHYTOLOGIST

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism

(2015) J. Davison et al.   SCIENCE

Evaluation of six primer pairs targeting the nuclear rRNA operon for characterization of arbuscular mycorrhizal fungal (AMF) communities using 454 pyrosequencing

(2014) Maarten Van Geel et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Sequencing and comparison of the mitochondrial COI gene from isolates of Arbuscular Mycorrhizal Fungi belonging to Gigasporaceae and Glomeraceae families

(2014) Roberto Borriello et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Towards the unification of sequence-based classification and sequence-based identification of host-associated microorganisms

(2014) Joshua R. Herr et al.   NEW PHYTOLOGIST

Where the wild things are: looking for uncultured Glomeromycota

(2014) Brian M. Ohsowski et al.   NEW PHYTOLOGIST

Will different OTU delineation methods change interpretation of arbuscular mycorrhizal fungal community patterns?

(2014) Ylva Lekberg et al.   NEW PHYTOLOGIST

The Largest Subunit of RNA Polymerase II as a New Marker Gene to Study Assemblages of Arbuscular Mycorrhizal Fungi in the Field

(2014) Herbert Stockinger et al.   PLoS One

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

(2014) C. L. Schoch et al.   Database-The Journal of Biological Databases and Curation

Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus

(2014) Kui Lin et al.   PLoS Genetics

Intragenomic Heterogeneity of 16S rRNA Genes Causes Overestimation of Prokaryotic Diversity

(2013) Dong-Lei Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences

(2013) Maarja Öpik et al.   Botany

Specialization from synthesis: How ribosome diversity can customize protein function

(2013) Aleksandra Filipovska et al.   FEBS LETTERS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

ITS1 versus ITS2 as DNA metabarcodes for fungi

(2013) R. Blaalid et al.   Molecular Ecology Resources

Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi

(2013) Maarja Öpik et al.   MYCORRHIZA

Fungal systematics: is a new age of enlightenment at hand?

(2013) David S. Hibbett et al.   NATURE REVIEWS MICROBIOLOGY

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Extreme diversification of the mating type-high-mobility group (MATA-HMG) gene family in a plant-associated arbuscular mycorrhizal fungus

(2013) Rohan Riley et al.   NEW PHYTOLOGIST

Filling Gaps in Biodiversity Knowledge for Macrofungi: Contributions and Assessment of an Herbarium Collection DNA Barcode Sequencing Project

(2013) Todd W. Osmundson et al.   PLoS One

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

(2013) E. Tisserant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: Is there a universal solution?

(2013) Petr Kohout et al.   SOIL BIOLOGY & BIOCHEMISTRY

Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi

(2013) Daniel L. Lindner et al.   Ecology and Evolution

Arbuscular mycorrhizal colonization of giant sequoia (Sequoiadendron giganteum) in response to restoration practices

(2012) C. Fahey et al.   MYCOLOGIA

Keeping it in the family: segregation of genetic variation inGlomus irregulare

(2012) Thorunn Helgason   NEW PHYTOLOGIST

PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution

(2012) Stéphane Mahé et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inter- and intrasporal nuclear ribosomal gene sequence variation within one isolate of arbuscular mycorrhizal fungus, Diversispora sp.

(2012) Odile Thiéry et al.   SYMBIOSIS

Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

(2011) Kuan-Liang Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Alien plants associate with widespread generalist arbuscular mycorrhizal fungal taxa: evidence from a continental-scale study using massively parallel 454 sequencing

(2011) Mari Moora et al.   JOURNAL OF BIOGEOGRAPHY

Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences

(2011) László G. Nagy et al.   NEW PHYTOLOGIST

Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level

(2011) Manuela Krüger et al.   NEW PHYTOLOGIST

Global diversity and distribution of arbuscular mycorrhizal fungi

(2011) Stephanie N. Kivlin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Functional specialization of ribosomes?

(2011) Wendy V. Gilbert   TRENDS IN BIOCHEMICAL SCIENCES

Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences

(2011) David S. Hibbett et al.   Fungal Biology Reviews

Intra-isolate genome variation in arbuscular mycorrhizal fungi persists in the transcriptome

(2010) E. BOON et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories

(2010) JEFF R. POWELL et al.   MOLECULAR ECOLOGY

Impact of multispores in vitro subcultivation of Glomus sp. MUCL 43194 (DAOM 197198) on vegetative compatibility and genetic diversity detected by AFLP

(2010) Antonio Cárdenas-Flores et al.   MYCORRHIZA

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)

(2010) M. Öpik et al.   NEW PHYTOLOGIST

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

DNA barcoding of arbuscular mycorrhizal fungi

(2010) Herbert Stockinger et al.   NEW PHYTOLOGIST

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

The mitochondrial genome sequence of the arbuscular mycorrhizal fungusGlomus intraradicesisolate 494 and implications for the phylogenetic placement ofGlomus

(2009) Jaikoo Lee et al.   NEW PHYTOLOGIST

DNA-based species level detection ofGlomeromycota: one PCR primer set for all arbuscular mycorrhizal fungi

(2009) Manuela Krüger et al.   NEW PHYTOLOGIST

Fungal ecology catches fire

(2009) David S. Hibbett et al.   NEW PHYTOLOGIST

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

(2008) I. Milne et al.   BIOINFORMATICS

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Intragenomic Variation of Fungal Ribosomal Genes Is Higher than Previously Thought

(2008) U. K. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION

How to know unknown fungi: the role of a herbarium

(2008) Patrick M. Brock et al.   NEW PHYTOLOGIST