Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus

Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia

(2013) Timothy Y. James et al.   CURRENT BIOLOGY

An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota)

(2013) Dirk Redecker et al.   MYCORRHIZA

High-throughput microbial population genomics using the Cortex variation assembler

(2012) Zamin Iqbal et al.   BIOINFORMATICS

Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi

(2012) Salvador Capella-Gutiérrez et al.   BMC BIOLOGY

Searching for clues of sexual reproduction in the genomes of arbuscular mycorrhizal fungi

(2012) Rohan Riley et al.   Fungal Ecology

A gene for carotene cleavage required for pheromone biosynthesis and carotene regulation in the fungus Phycomyces blakesleeanus

(2012) Víctor G. Tagua et al.   FUNGAL GENETICS AND BIOLOGY

De novo assembly and genotyping of variants using colored de Bruijn graphs

(2012) Zamin Iqbal et al.   NATURE GENETICS

Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

(2012) Diane G. O. Saunders et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Spore development and nuclear inheritance in arbuscular mycorrhizal fungi

(2011) Julie Marleau et al.   BMC EVOLUTIONARY BIOLOGY

Evidence for acquisition of virulence effectors in pathogenic chytrids

(2011) Guiling Sun et al.   BMC EVOLUTIONARY BIOLOGY

A Secreted Fungal Effector of Glomus intraradices Promotes Symbiotic Biotrophy

(2011) Silke Kloppholz et al.   CURRENT BIOLOGY

Conserved Meiotic Machinery in Glomus spp., a Putatively Ancient Asexual Fungal Lineage

(2011) Sébastien Halary et al.   Genome Biology and Evolution

Plugging into the network: belowground connections between germlings and extraradical mycelium of arbuscular mycorrhizal fungi

(2011) Cristiana Sbrana et al.   MYCOLOGIA

Tumour evolution inferred by single-cell sequencing

(2011) Nicholas Navin et al.   NATURE

Estimation of the Glomus intraradices nuclear DNA content

(2011) Kinga A. Sędzielewska et al.   NEW PHYTOLOGIST

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

(2011) E. Tisserant et al.   NEW PHYTOLOGIST

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Genomic Transition to Pathogenicity in Chytrid Fungi

(2011) Suzanne Joneson et al.   PLoS Pathogens

Arbuscular Mycorrhiza: The Challenge to Understand the Genetics of the Fungal Partner

(2010) Ian R. Sanders et al.   Annual Review of Genetics

Segregation in a Mycorrhizal Fungus Alters Rice Growth and Symbiosis-Specific Gene Transcription

(2010) Caroline Angelard et al.   CURRENT BIOLOGY

Intra-isolate genome variation in arbuscular mycorrhizal fungi persists in the transcriptome

(2010) E. BOON et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Clonality and Recombination in the Life History of an Asexual Arbuscular Mycorrhizal Fungus

(2010) H. C. den Bakker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

(2010) Francis Martin et al.   NATURE

Fungal Effector Proteins

(2009) Ioannis Stergiopoulos et al.   Annual Review of Phytopathology

T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm

(2009) Julien Jorda et al.   BIOINFORMATICS

Recombination in Glomus intraradices, a supposed ancient asexual arbuscular mycorrhizal fungus

(2009) Daniel Croll et al.   BMC EVOLUTIONARY BIOLOGY

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

‘Glomus intraradicesDAOM197198’, a model fungus in arbuscular mycorrhiza research, is notGlomus intraradices

(2009) Herbert Stockinger et al.   NEW PHYTOLOGIST

The mitochondrial genome sequence of the arbuscular mycorrhizal fungusGlomus intraradicesisolate 494 and implications for the phylogenetic placement ofGlomus

(2009) Jaikoo Lee et al.   NEW PHYTOLOGIST

Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication

(2009) Li-Jun Ma et al.   PLoS Genetics

Direct mapping and alignment of protein sequences onto genomic sequence

(2008) Osamu Gotoh   BIOINFORMATICS

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

(2008) F. Martin et al.   NATURE

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

(2008) Nicole King et al.   NATURE

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY

Nonself vegetative fusion and genetic exchange in the arbuscular mycorrhizal fungus Glomus intraradices

(2008) Daniel Croll et al.   NEW PHYTOLOGIST

The long hard road to a completedGlomus intraradicesgenome

(2008) F. Martin et al.   NEW PHYTOLOGIST

A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence

(2008) Osamu Gotoh   NUCLEIC ACIDS RESEARCH

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY