Antibiotic resistance due to an unusual ColE1-type replicon plasmid in Aeromonas salmonicida

Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida

(2016) Antony T. Vincent et al.   BMC GENOMICS

Insight into the mobilome of Aeromonas strains

(2015) Marta Piotrowska et al.   Frontiers in Microbiology

Diversity and Homogeneity among Small Plasmids of Aeromonas salmonicida subsp. salmonicida Linked with Geographical Origin

(2015) Sabrina A. Attéré et al.   Frontiers in Microbiology

Detection of Variants of the pRAS3, pAB5S9, and pSN254 Plasmids in Aeromonas salmonicida subsp. salmonicida: Multidrug Resistance, Interspecies Exchanges, and Plasmid Reshaping

(2014) Antony T. Vincent et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

(2014) David Coil et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Optimization of a plasmid electroporation protocol for Aeromonas salmonicida subsp. salmonicida

(2014) Stéphanie Dallaire-Dufresne et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Antibiotic resistance sweeping developing world

(2014) Sara Reardon   NATURE

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Antimicrobial use in aquaculture re-examined: its relevance to antimicrobial resistance and to animal and human health

(2013) Felipe C. Cabello et al.   ENVIRONMENTAL MICROBIOLOGY

High incidence of antibiotic multi-resistant bacteria in coastal areas dedicated to fish farming

(2013) A. Labella et al.   MARINE POLLUTION BULLETIN

DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution

(2013) Xuhua Xia   MOLECULAR BIOLOGY AND EVOLUTION

Virulence, genomic features, and plasticity of Aeromonas salmonicida subsp. salmonicida, the causative agent of fish furunculosis

(2013) Stéphanie Dallaire-Dufresne et al.   VETERINARY MICROBIOLOGY

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

(2012) Zhang Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Qualimap: evaluating next-generation sequencing alignment data

(2012) Fernando García-Alcalde et al.   BIOINFORMATICS

Prevalence of tet gene and complete genome sequencing of tet gene-encoded plasmid (pAHH01) isolated from Aeromonas species in South Korea

(2012) J.E. Han et al.   JOURNAL OF APPLIED MICROBIOLOGY

Draft Genome Sequence of the Virulent Strain 01-B526 of the Fish Pathogen Aeromonas salmonicida

(2012) S. J. Charette et al.   JOURNAL OF BACTERIOLOGY

First description of ColE-type plasmid in Aeromonas spp. carrying quinolone resistance (qnrS2) gene

(2012) J.E. Han et al.   LETTERS IN APPLIED MICROBIOLOGY

The structural basis for substrate versatility of chloramphenicol acetyltransferase CATI

(2012) Tapan Biswas et al.   PROTEIN SCIENCE

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Functional Organization of MobB, a Small Protein Required for Efficient Conjugal Transfer of Plasmid R1162

(2011) R. Meyer   JOURNAL OF BACTERIOLOGY

Prevalence of ColE1-Like Plasmids and Kanamycin Resistance Genes in Salmonella enterica Serovars

(2010) C.-Y. Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

(2010) Robert Schmieder et al.   BMC BIOINFORMATICS

A Sequence That Affects the Copy Number and Stability of pSW200 and ColE1

(2010) Y.-C. Wu et al.   JOURNAL OF BACTERIOLOGY

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Free energy calculation of modified base-pair formation in explicit solvent: A predictive model

(2009) F. A.P. Vendeix et al.   RNA

The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen

(2008) Michael E Reith et al.   BMC GENOMICS