Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida

Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT

(2015) María Elisa Pavan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae

(2015) Monique Turmel et al.   Genome Biology and Evolution

Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection

(2015) Martin D. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

(2014) David Coil et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Improvement in the DNA sequencing of genomes bearing long repeated elements

(2014) Antony T. Vincent et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Tracking antibiotic resistance

(2014) S. A. Beatson et al.   SCIENCE

Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case

(2014) Sophie M. Colston et al.   mBio

Transposable element islands facilitate adaptation to novel environments in an invasive species

(2014) Lukas Schrader et al.   Nature Communications

Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments

(2014) Lukasz Dziewit et al.   Frontiers in Microbiology

Clustering subspecies of Aeromonas salmonicida using IS630 typing

(2013) Nicole Studer et al.   BMC MICROBIOLOGY

Effect of temperature on the growth kinetics and predictive growth model of Aeromonas hydrophila on squid (Sepioteuthis sepioidea)

(2013) Shin Young Park et al.   FOOD SCIENCE AND BIOTECHNOLOGY

Virulence, genomic features, and plasticity of Aeromonas salmonicida subsp. salmonicida, the causative agent of fish furunculosis

(2013) Stéphanie Dallaire-Dufresne et al.   VETERINARY MICROBIOLOGY

Multilocus genetics to reconstruct aeromonad evolution

(2012) Frédéric Roger et al.   BMC MICROBIOLOGY

Draft Genome Sequence of the Virulent Strain 01-B526 of the Fish Pathogen Aeromonas salmonicida

(2012) S. J. Charette et al.   JOURNAL OF BACTERIOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

An Insertion Sequence-Dependent Plasmid Rearrangement in Aeromonas salmonicida Causes the Loss of the Type Three Secretion System

(2012) Katherine H. Tanaka et al.   PLoS One

Characterization of Aeromonas strains isolated from Indian foods using rpoD gene sequencing and whole cell protein analysis

(2012) Vandan Nagar et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Prevalence, Characterization, and Antimicrobial Resistance of Aeromonas Strains from Various Retail Food Products in Mumbai, India

(2011) Vandan Nagar et al.   JOURNAL OF FOOD SCIENCE

Alteration of virulence factors and rearrangement of pAsa5 plasmid caused by the growth of Aeromonas salmonicida in stressful conditions

(2011) Rana K. Daher et al.   VETERINARY MICROBIOLOGY

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

The Genus Aeromonas: Taxonomy, Pathogenicity, and Infection

(2010) J. M. Janda et al.   CLINICAL MICROBIOLOGY REVIEWS

The Exceptionally Large Chloroplast Genome of the Green Alga Floydiella terrestris Illuminates the Evolutionary History of the Chlorophyceae

(2010) J. S. Brouard et al.   Genome Biology and Evolution

Higher tRNA diversity in thermophilic bacteria: A possible adaptation to growth at high temperature

(2010) Siddhartha Sankar Satapathy et al.   MICROBIOLOGICAL RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genomics of an extreme psychrophile, Psychromonas ingrahamii

(2009) Monica Riley et al.   BMC GENOMICS

Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins

(2009) Raghu Metpally et al.   BMC GENOMICS

Outbreaks of an ulcerative and haemorrhagic disease in Arctic char Salvelinus alpinus caused by Aeromonas salmonicida subsp. smithia

(2009) E Goldschmidt-Clermont et al.   DISEASES OF AQUATIC ORGANISMS

The adaptive role of transposable elements in the Drosophila genome

(2009) Josefa González et al.   GENE

Genetic characterization of pAsa6, a new plasmid from Aeromonas salmonicida subsp. salmonicida that encodes a type III effector protein AopH homolog

(2009) Mohsen Najimi et al.   PLASMID

The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen

(2008) Michael E Reith et al.   BMC GENOMICS

High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster

(2008) Josefa González et al.   PLOS BIOLOGY