Geographic Variation in Genomic Signals of Admixture Between Two Closely Related European Sepsid Fly Species

Two transects reveal remarkable variation in gene flow on opposite ends of a European toad hybrid zone

(2023) I. van Riemsdijk et al.   HEREDITY

Comparative sexual selection in field and laboratory in a guild of sepsid dung flies

(2021) Wolf U. Blanckenhorn et al.   ANIMAL BEHAVIOUR

Global population genetic structure and demographic trajectories of the black soldier fly, Hermetia illucens

(2021) Cengiz Kaya et al.   BMC BIOLOGY

Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource

(2021) Martin Kapun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spatial variation in gene flow across a hybrid zone reveals causes of reproductive isolation and asymmetric introgression in wall lizards

(2020) Weizhao Yang et al.   EVOLUTION

Sexual size dimorphism is associated with reproductive life history trait differentiation in coexisting sepsid flies

(2020) Wolf U. Blanckenhorn et al.   OIKOS

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses

(2020) Martin Kapun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Usefulness and limitations of thermal performance curves in predicting ectotherm development under climatic variability

(2019) Rassim Khelifa et al.   JOURNAL OF ANIMAL ECOLOGY

Exaggerated male forelegs are not more differentiated than wing morphology in two widespread sister species of black scavenger flies

(2019) Julian Baur et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Largely flat latitudinal life history clines in the dung fly Sepsis fulgens across Europe (Diptera: Sepsidae)

(2018) Jeannine Roy et al.   OECOLOGIA

Genomic Signatures of Reinforcement

(2018) Austin Garner et al.   Genes

Geographic patterns of postzygotic isolation between two closely related widespread dung fly species (Sepsis cynipsea and Sepsis neocynipsea ; Diptera: Sepsidae)

(2018) Athene Giesen et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Deleterious variation shapes the genomic landscape of introgression

(2018) Bernard Y. Kim et al.   PLoS Genetics

Approximate Bayesian Computation

(2018) Mark A. Beaumont   Annual Review of Statistics and Its Application

Distinguishing Recent Admixture from Ancestral Population Structure

(2017) Christoph Theunert et al.   Genome Biology and Evolution

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

(2017) M. Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

Sexual selection on male size drives the evolution of male-biased sexual size dimorphism via the prolongation of male development

(2016) Patrick T. Rohner et al.   EVOLUTION

The evolution of genomic islands by increased establishment probability of linked alleles

(2016) Sam Yeaman et al.   MOLECULAR ECOLOGY

Distinguishing contemporary hybridization from past introgression with postgenomic ancestry-informative SNPs in strongly differentiated Ciona species

(2016) Sarah Bouchemousse et al.   MOLECULAR ECOLOGY

Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika

(2016) Hugo F. Gante et al.   MOLECULAR ECOLOGY

Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism

(2016) Polina Yu Novikova et al.   NATURE GENETICS

Genome-Wide Divergence in the West-African Malaria Vector Anopheles melas

(2016) Kevin C. Deitz et al.   G3-Genes Genomes Genetics

Evolutionary analysis identifies multiple genome expansions and contractions in Sepsidae (Diptera) and suggests targets for future genomic research

(2015) Kathy F. Y. Su et al.   CLADISTICS

Deep History of East Asian Populations Revealed Through Genetic Analysis of the Ainu

(2015) C. Jeong et al.   GENETICS

Distribution, diversity gradients and Rapoport's elevational rule in the black scavenger flies of the Swiss Alps (Diptera: Sepsidae)

(2015) Patrick T. Rohner et al.   Insect Conservation and Diversity

The genomics of organismal diversification illuminated by adaptive radiations

(2015) Daniel Berner et al.   TRENDS IN GENETICS

Behavioural barriers to reproduction may evolve faster than sexual morphology among populations of a dung fly (Sepsidae)

(2014) Nalini Puniamoorthy   ANIMAL BEHAVIOUR

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Microsatellite data show recent demographic expansions in sedentary but not in nomadic human populations in Africa and Eurasia

(2014) Carla Aimé et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Population-Genetic Inference from Pooled-Sequencing Data

(2014) Michael Lynch et al.   Genome Biology and Evolution

Maximum-Likelihood Inference of Population Size Contractions from Microsatellite Data

(2014) Raphaël Leblois et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs

(2014) Jeffrey W. Streicher et al.   MOLECULAR ECOLOGY

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

Speciation and Introgression between Mimulus nasutus and Mimulus guttatus

(2014) Yaniv Brandvain et al.   PLoS Genetics

Evidence for Mito-Nuclear and Sex-Linked Reproductive Barriers between the Hybrid Italian Sparrow and Its Parent Species

(2014) Cassandra N. Trier et al.   PLoS Genetics

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

Hybridization is important in evolution, but is speciation?

(2013) G.-P. Saetre   JOURNAL OF EVOLUTIONARY BIOLOGY

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Genome-wide patterns of divergence and gene flow across a butterfly radiation

(2012) Nicola J. Nadeau et al.   MOLECULAR ECOLOGY

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania

(2011) David Reich et al.   AMERICAN JOURNAL OF HUMAN GENETICS

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

INCREASED FLORAL DIVERGENCE IN SYMPATRIC MONKEYFLOWERS

(2011) Dena L. Grossenbacher et al.   EVOLUTION

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ecological and geographic modes of species divergence in wild tomatoes

(2010) Takuya Nakazato et al.   AMERICAN JOURNAL OF BOTANY

Strategic Ejaculation in the Black Scavenger Fly Sepsis cynipsea Revisited: Copula Duration as a Function of Sperm Depletion and Body Size

(2010) Yvonne Teuschl et al.   ETHOLOGY

To Pool, or Not to Pool?

(2010) David J. Cutler et al.   GENETICS

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Understanding the onset of hybrid speciation

(2010) Arne W. Nolte et al.   TRENDS IN GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

ADAPTIVE POPULATION DIVERGENCE IN CRYPTIC COLOR-PATTERN FOLLOWING A REDUCTION IN GENE FLOW

(2009) Patrik Nosil   EVOLUTION

From kissing to belly stridulation: comparative analysis reveals surprising diversity, rapid evolution, and much homoplasy in the mating behaviour of 27 species of sepsid flies (Diptera: Sepsidae)

(2009) N. PUNIAMOORTHY et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Morphology versus molecules: the phylogenetic relationships of Sepsidae (Diptera: Cyclorrhapha) based on morphology and DNA sequence data from ten genes

(2008) Kathy Feng-Yi Su et al.   CLADISTICS