Speciation and Introgression between Mimulus nasutus and Mimulus guttatus

NICHE AND RANGE SIZE PATTERNS SUGGEST THAT SPECIATION BEGINS IN SMALL, ECOLOGICALLY DIVERGED POPULATIONS IN NORTH AMERICAN MONKEYFLOWERS (MIMULUS SPP.)

(2014) Dena L. Grossenbacher et al.   EVOLUTION

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

The geography and ecology of plant speciation: range overlap and niche divergence in sister species

(2014) B. L. Anacker et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Genetic Atlas of Human Admixture History

(2014) G. Hellenthal et al.   SCIENCE

Loss and Recovery of Genetic Diversity in Adapting Populations of HIV

(2014) Pleuni S. Pennings et al.   PLoS Genetics

PATTERNS OF MATING, GENERATION OF DIVERSITY, AND FITNESS OF OFFSPRING IN AGEUMHYBRID SWARM

(2013) Markus Ruhsam et al.   EVOLUTION

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

(2013) Maanasa Raghavan et al.   NATURE

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

(2013) Tanja Slotte et al.   NATURE GENETICS

Genomic signatures of selection at linked sites: unifying the disparity among species

(2013) Asher D. Cutter et al.   NATURE REVIEWS GENETICS

Evolutionary consequences of self-fertilization in plants

(2013) S. I. Wright et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic Identification of Founding Haplotypes Reveals the History of the Selfing Species Capsella rubella

(2013) Yaniv Brandvain et al.   PLoS Genetics

Genomic Evidence for Island Population Conversion Resolves Conflicting Theories of Polar Bear Evolution

(2013) James A. Cahill et al.   PLoS Genetics

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

(2013) Laurent AF Frantz et al.   GENOME BIOLOGY

Genomic consequences of transitions from cross- to self-fertilization on the efficacy of selection in three independently derived selfing plants

(2012) Rob W Ness et al.   BMC GENOMICS

TEMPO AND MODE IN PLANT BREEDING SYSTEM EVOLUTION

(2012) Emma E. Goldberg et al.   EVOLUTION

Population Genetics Models of Local Ancestry

(2012) S. Gravel   GENETICS

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

AllotetraploidMimulus sookensisare highly interfertile despite independent origins

(2012) JENNIFER L. MODLISZEWSKI et al.   MOLECULAR ECOLOGY

Reconstructing Native American population history

(2012) David Reich et al.   NATURE

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity

(2012) Erik C Andersen et al.   NATURE GENETICS

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

(2012) W. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The distribution of the coalescence time and the number of pairwise nucleotide differences in a model of population divergence or speciation with an initial period of gene flow

(2012) Hilde M. Wilkinson-Herbots   THEORETICAL POPULATION BIOLOGY

Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species?

(2012) Ellen M. Leffler et al.   PLOS BIOLOGY

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

A Simple Method for Finding Explicit Analytic Transition Densities of Diffusion Processes with General Diploid Selection

(2011) Y. S. Song et al.   GENETICS

Effects of Inversions on Within- and Between-Species Recombination and Divergence

(2011) Laurie S. Stevison et al.   Genome Biology and Evolution

Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species

(2011) Suo Qiu et al.   Genome Biology and Evolution

Early evolution in a hybrid swarm between outcrossing and selfing lineages in Geum

(2011) M Ruhsam et al.   HEREDITY

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination

(2011) A. GERALDES et al.   MOLECULAR ECOLOGY

Sympatric bromeliad species (Pitcairnia spp.) facilitate tests of mechanisms involved in species cohesion and reproductive isolation in Neotropical inselbergs

(2011) C. PALMA-SILVA et al.   MOLECULAR ECOLOGY

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

(2011) M. W. Nachman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic impacts of chromosomal inversions in parapatric Drosophila species

(2011) S. E. McGaugh et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

Populations of weedy crop-wild hybrid beets show contrasting variation in mating system and population genetic structure

(2010) Jean-François Arnaud et al.   Evolutionary Applications

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Species Selection Maintains Self-Incompatibility

(2010) E. E. Goldberg et al.   SCIENCE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The Impact of Sampling Schemes on the Site Frequency Spectrum in Nonequilibrium Subdivided Populations

(2009) T. Stadler et al.   GENETICS

Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species

(2009) M A F Noor et al.   HEREDITY

Natural selection in action during speciation

(2009) S. Via   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent speciation associated with the evolution of selfing in Capsella

(2009) J. P. Foxe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck

(2009) Y.-L. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HYBRID MALE STERILITY IN MIMULUS (PHRYMACEAE) IS ASSOCIATED WITH A GEOGRAPHICALLY RESTRICTED MITOCHONDRIAL REARRANGEMENT

(2008) Andrea L. Case et al.   EVOLUTION

Recombination and Speciation: Loci Near Centromeres Are More Differentiated Than Loci Near Telomeres Between Subspecies of the European Rabbit (Oryctolagus cuniculus)

(2008) M. Carneiro et al.   GENETICS

Genotype, haplotype and copy-number variation in worldwide human populations

(2008) Mattias Jakobsson et al.   NATURE