Centromeric and pericentric transcription and transcripts: their intricate relationships, regulation, and functions
出版年份 2023 全文链接
标题
Centromeric and pericentric transcription and transcripts: their intricate relationships, regulation, and functions
作者
关键词
-
出版物
CHROMOSOMA
Volume 132, Issue 3, Pages 211-230
出版商
Springer Science and Business Media LLC
发表日期
2023-07-04
DOI
10.1007/s00412-023-00801-x
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Incorporation of CENP-A/CID into centromeres during early Drosophila embryogenesis does not require RNA polymerase II–mediated transcription
- (2022) Samadri Ghosh et al. CHROMOSOMA
- Plasticity in centromere organization and kinetochore composition: Lessons from diversity
- (2022) Midori Ishii et al. CURRENT OPINION IN CELL BIOLOGY
- DiMeLo-seq: a long-read, single-molecule method for mapping protein–DNA interactions genome wide
- (2022) Nicolas Altemose et al. NATURE METHODS
- A transcriptional roadblock protects yeast centromeres
- (2022) Sabrine Hedouin et al. NUCLEIC ACIDS RESEARCH
- Complete genomic and epigenetic maps of human centromeres
- (2022) Nicolas Altemose et al. SCIENCE
- The complete sequence of a human genome
- (2022) Sergey Nurk et al. SCIENCE
- HSF1-Activated Non-Coding Stress Response: Satellite lncRNAs and Beyond, an Emerging Story with a Complex Scenario
- (2022) Claire Vourc’h et al. Genes
- Repeat-based holocentromeres influence genome architecture and karyotype evolution
- (2022) Paulo G. Hofstatter et al. CELL
- Human centromere repositioning activates transcription and opens chromatin fibre structure
- (2022) Catherine Naughton et al. Nature Communications
- m 6 A modification of HSATIII lncRNAs regulates temperature‐dependent splicing
- (2021) Kensuke Ninomiya et al. EMBO JOURNAL
- Duplex Structure of Double-Stranded RNA Provides Stability against Hydrolysis Relative to Single-Stranded RNA
- (2021) Ke Zhang et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Genome-wide mapping reveals R-loops associated with centromeric repeats in maize
- (2021) Yang Liu et al. GENOME RESEARCH
- Formation of artificial chromosomes in Caenorhabditis elegans and analyses of their segregation in mitosis, DNA sequence composition and holocentromere organization
- (2021) Zhongyang Lin et al. NUCLEIC ACIDS RESEARCH
- Activation of homologous recombination in G1 preserves centromeric integrity
- (2021) Duygu Yilmaz et al. NATURE
- Mutation and selection explain why many eukaryotic centromeric DNA sequences are often A + T rich
- (2021) Anne C Barbosa et al. NUCLEIC ACIDS RESEARCH
- BRCA1 prevents R-loop-associated centromeric instability
- (2021) Carine Racca et al. Cell Death & Disease
- What makes a centromere?
- (2020) Paul B. Talbert et al. EXPERIMENTAL CELL RESEARCH
- Back-spliced RNA from retrotransposon binds to centromere and regulates centromeric chromatin loops in maize
- (2020) Yalin Liu et al. PLOS BIOLOGY
- “Lessons from the extremes: Epigenetic and genetic regulation in point monocentromere and holocentromere establishment on artificial chromosomes”
- (2020) Charmaine Yan Yu Wong et al. EXPERIMENTAL CELL RESEARCH
- Super-Resolution Microscopy Reveals Diversity of Plant Centromere Architecture
- (2020) Veit Schubert et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Centromeric RNA and Its Function at and Beyond Centromeric Chromatin
- (2020) Samuel Corless et al. JOURNAL OF MOLECULAR BIOLOGY
- CENP-A nucleosome—a chromatin-embedded pedestal for the centromere: lessons learned from structural biology
- (2020) Ahmad Ali-Ahmad et al. Essays in Biochemistry
- Telomere-to-telomere assembly of a complete human X chromosome
- (2020) Karen H. Miga et al. NATURE
- The centromere comes into focus: from CENP-A nucleosomes to kinetochore connections with the spindle
- (2020) Kathryn Kixmoeller et al. Open Biology
- Centromeric Transcription: A Conserved Swiss-Army Knife
- (2020) Ganesan Arunkumar et al. Genes
- Formation of the CenH3-Deficient Holocentromere in Lepidoptera Avoids Active Chromatin
- (2020) Aruni P. Senaratne et al. CURRENT BIOLOGY
- R-loops at centromeric chromatin contribute to defects in kinetochore integrity and chromosomal instability in budding yeast
- (2020) Prashant K. Mishra et al. MOLECULAR BIOLOGY OF THE CELL
- Massively multiplex single-molecule oligonucleosome footprinting
- (2020) Nour J Abdulhay et al. eLife
- Early splicing functions of fission yeast Prp16 and its unexpected requirement for gene Silencing is governed by intronic features
- (2019) Drisya Vijayakumari et al. RNA Biology
- Interplay between DNA sequence and negative superhelicity drives R-loop structures
- (2019) Robert Stolz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Point centromere activity requires an optimal level of centromeric noncoding RNA
- (2019) Yick Hin Ling et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA exploits an exposed regulatory site to inhibit the enzymatic activity of PRC2
- (2019) Qi Zhang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Nucleosomes Stabilize ssRNA-dsDNA Triple Helices in Human Cells
- (2019) Rodrigo Maldonado et al. MOLECULAR CELL
- R-Loops as Cellular Regulators and Genomic Threats
- (2019) Madzia P. Crossley et al. MOLECULAR CELL
- Identification of functional long non-coding RNAs in C. elegans
- (2019) Alper Akay et al. BMC BIOLOGY
- R-DeeP: Proteome-wide and Quantitative Identification of RNA-Dependent Proteins by Density Gradient Ultracentrifugation
- (2019) Maiwen Caudron-Herger et al. MOLECULAR CELL
- Long-read direct RNA sequencing by 5’-Cap capturing reveals the impact of Piwi on the widespread exonization of transposable elements in locusts
- (2019) Feng Jiang et al. RNA Biology
- Islands of retroelements are major components of Drosophila centromeres
- (2019) Ching-Ho Chang et al. PLOS BIOLOGY
- Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice
- (2019) Yuan Fang et al. GENOME RESEARCH
- The histone variant H2A.Z in gene regulation
- (2019) Benedetto Daniele Giaimo et al. Epigenetics & Chromatin
- Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF
- (2019) Anders S. Hansen et al. MOLECULAR CELL
- RNA Interactions Are Essential for CTCF-Mediated Genome Organization
- (2019) Ricardo Saldaña-Meyer et al. MOLECULAR CELL
- The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape
- (2019) Daniel N. Weinberg et al. NATURE
- Organization of Chromatin by Intrinsic and Regulated Phase Separation
- (2019) Bryan A. Gibson et al. CELL
- RNA Splicing by the Spliceosome
- (2019) Max E. Wilkinson et al. Annual Review of Biochemistry
- Alpha satellite DNA biology: finding function in the recesses of the genome
- (2018) Shannon M. McNulty et al. CHROMOSOME RESEARCH
- High‐resolution transcription maps reveal the widespread impact of roadblock termination in yeast
- (2018) Tito Candelli et al. EMBO JOURNAL
- Unexpected conformational variations of the human centromeric chromatin complex
- (2018) Jitendra Thakur et al. GENES & DEVELOPMENT
- Simple and Complex Centromeric Satellites inDrosophilaSibling Species
- (2018) Paul B. Talbert et al. GENETICS
- Centromere transcription allows CENP-A to transit from chromatin association to stable incorporation
- (2018) Georg O.M. Bobkov et al. JOURNAL OF CELL BIOLOGY
- Centromere Biology: transcription goes on stage.
- (2018) Carlos Perea-Resa et al. MOLECULAR AND CELLULAR BIOLOGY
- Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer
- (2018) Quan Zhu et al. MOLECULAR CELL
- Linear assembly of a human centromere on the Y chromosome
- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
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- (2018) Matthias W. Hentze et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Histone H3K9 and H4 Acetylations and Transcription Facilitate the Initial CENP-AHCP−3 Deposition and De Novo Centromere Establishment in Caenorhabditis elegans Artificial Chromosomes
- (2018) Jing Zhu et al. Epigenetics & Chromatin
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- (2018) Wei-Ting Lu et al. Nature Communications
- Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells
- (2018) Alexis Autour et al. Nature Communications
- Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts
- (2018) Jason C Bell et al. eLife
- Simple and Complex Centromeric Satellites inDrosophilaSibling Species
- (2018) Paul B. Talbert et al. GENETICS
- The Biogenesis, Functions, and Challenges of Circular RNAs
- (2018) Xiang Li et al. MOLECULAR CELL
- Centromere and Pericentromere Transcription: Roles and Regulation … in Sickness and in Health
- (2018) Ksenia Smurova et al. Frontiers in Genetics
- Determinants of Histone H3K4 Methylation Patterns
- (2017) Luis M. Soares et al. MOLECULAR CELL
- Is H3K4me1 at enhancers correlative or causative?
- (2017) Alvaro Rada-Iglesias NATURE GENETICS
- Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize
- (2017) Lu Chen et al. NEW PHYTOLOGIST
- A mitosis-specific and R loop–driven ATR pathway promotes faithful chromosome segregation
- (2017) Lilian Kabeche et al. SCIENCE
- Demethylated HSATII DNA and HSATII RNA Foci Sequester PRC1 and MeCP2 into Cancer-Specific Nuclear Bodies
- (2017) Lisa L. Hall et al. Cell Reports
- Major satellite repeat RNA stabilize heterochromatin retention of Suv39h enzymes by RNA-nucleosome association and RNA:DNA hybrid formation
- (2017) Oscar Velazquez Camacho et al. eLife
- RNA-dependent stabilization of SUV39H1 at constitutive heterochromatin
- (2017) Whitney L Johnson et al. eLife
- Mitotic noncoding RNA processing promotes kinetochore and spindle assembly inXenopus
- (2016) Andrew W. Grenfell et al. JOURNAL OF CELL BIOLOGY
- Nuclear m 6 A Reader YTHDC1 Regulates mRNA Splicing
- (2016) Wen Xiao et al. MOLECULAR CELL
- The Phylogenetic Origins and Evolutionary History of Holocentric Chromosomes
- (2016) Marcial Escudero et al. SYSTEMATIC BOTANY
- A Centromere-Signaling Network Underlies the Coordination among Mitotic Events
- (2016) Prasad Trivedi et al. TRENDS IN BIOCHEMICAL SCIENCES
- Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres
- (2016) Wei-Hao Shang et al. Nature Communications
- Epigenetic engineering reveals a balance between histone modifications and transcription in kinetochore maintenance
- (2016) Oscar Molina et al. Nature Communications
- Centromeric Transcription Regulates Aurora-B Localization and Activation
- (2016) Michael D. Blower Cell Reports
- The Chromatin of Candida albicans Pericentromeres Bears Features of Both Euchromatin and Heterochromatin
- (2016) Verónica Freire-Benéitez et al. Frontiers in Microbiology
- Simultaneous detection of mRNA and protein in single cells using immunofluorescence-combined single-molecule RNA FISH
- (2015) Jakub Kochan et al. BIOTECHNIQUES
- Transcription of tandemly repetitive DNA: functional roles
- (2015) Maria Assunta Biscotti et al. CHROMOSOME RESEARCH
- Establishment of Centromeric Chromatin by the CENP-A Assembly Factor CAL1 Requires FACT-Mediated Transcription
- (2015) Chin-Chi Chen et al. DEVELOPMENTAL CELL
- Mitotic Transcription Installs Sgo1 at Centromeres to Coordinate Chromosome Segregation
- (2015) Hong Liu et al. MOLECULAR CELL
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Short- and long-term effects of chromosome mis-segregation and aneuploidy
- (2015) Stefano Santaguida et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Holocentromeres inRhynchosporaare associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin
- (2015) André Marques et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species
- (2015) Hadas Hezroni et al. Cell Reports
- Sequence Features and Transcriptional Stalling within Centromere DNA Promote Establishment of CENP-A Chromatin
- (2015) Sandra Catania et al. PLoS Genetics
- Centromeric Heterochromatin: The Primordial Segregation Machine
- (2014) Kerry S. Bloom Annual Review of Genetics
- Histone H4 Lys 20 Monomethylation of the CENP-A Nucleosome Is Essential for Kinetochore Assembly
- (2014) Tetsuya Hori et al. DEVELOPMENTAL CELL
- The FACT complex interacts with the E3 ubiquitin ligase Psh1 to prevent ectopic localization of CENP-A
- (2014) Gary M.R. Deyter et al. GENES & DEVELOPMENT
- Centromeric histone variant CENP-A represses acetylation-dependent chromatin transcription that is relieved by histone chaperone NPM1
- (2014) Jayasha Shandilya et al. JOURNAL OF BIOCHEMISTRY
- Repetitive centromeric satellite RNA is essential for kinetochore formation and cell division
- (2014) Silvana Rošić et al. JOURNAL OF CELL BIOLOGY
- Identification of novelDrosophilacentromere-associated proteins
- (2014) Teresa K. Barth et al. PROTEOMICS
- Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation
- (2014) Jakub O. Westholm et al. Cell Reports
- A long non-coding RNA is required for targeting centromeric protein A to the human centromere
- (2014) Delphine Quénet et al. eLife
- Efficient neocentromere formation is suppressed by gene conversion to maintain centromere function at native physical chromosomal loci in Candida albicans
- (2013) J. Thakur et al. GENOME RESEARCH
- Histone Variant H2A.Z Functions in Sister Chromatid Cohesion in Saccharomyces cerevisiae
- (2013) Upasna Sharma et al. MOLECULAR AND CELLULAR BIOLOGY
- Polycomb-Dependent H3K27me1 and H3K27me2 Regulate Active Transcription and Enhancer Fidelity
- (2013) Karin J. Ferrari et al. MOLECULAR CELL
- Circular RNAs are a large class of animal RNAs with regulatory potency
- (2013) Sebastian Memczak et al. NATURE
- A two-step mechanism for epigenetic specification of centromere identity and function
- (2013) Daniele Fachinetti et al. NATURE CELL BIOLOGY
- Promiscuous RNA binding by Polycomb repressive complex 2
- (2013) Chen Davidovich et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Neocentromeres: a place for everything and everything in its place
- (2013) Kristin C. Scott et al. TRENDS IN GENETICS
- Structural basis of transcription elongation
- (2012) Fuensanta W. Martinez-Rucobo et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells
- (2012) Krishanpal Karmodiya et al. BMC GENOMICS
- High-resolution mapping and transcriptional activity analysis of chicken centromere sequences on giant lampbrush chromosomes
- (2012) Alla Krasikova et al. CHROMOSOME RESEARCH
- Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis
- (2012) Daniël P. Melters et al. CHROMOSOME RESEARCH
- Breaking the HAC Barrier: Histone H3K9 acetyl/methyl balance regulates CENP-A assembly
- (2012) Jun-ichirou Ohzeki et al. EMBO JOURNAL
- DNA-RNA hybrid formation mediates RNAi-directed heterochromatin formation
- (2012) Mina Nakama et al. GENES TO CELLS
- Long noncoding RNAs in C. elegans
- (2012) J.-W. Nam et al. GENOME RESEARCH
- Epigenetic engineering: histone H3K9 acetylation is compatible with kinetochore structure and function
- (2012) J. H. Bergmann et al. JOURNAL OF CELL SCIENCE
- An inverse relationship to germline transcription defines centromeric chromatin in C. elegans
- (2012) Reto Gassmann et al. NATURE
- Transcription in the maintenance of centromere chromatin identity
- (2012) F. L. Chan et al. NUCLEIC ACIDS RESEARCH
- Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution
- (2012) Z. Gong et al. PLANT CELL
- Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types
- (2012) Julia Salzman et al. PLoS One
- Active transcription and essential role of RNA polymerase II at the centromere during mitosis
- (2012) F. L. Chan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The role of FACT in making and breaking nucleosomes
- (2011) Tim Formosa Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Histone H3 trimethylation at lysine 36 is associated with constitutive and facultative heterochromatin
- (2011) S. Chantalat et al. GENOME RESEARCH
- Identification of Noncoding Transcripts from within CENP-A Chromatin at Fission Yeast Centromeres
- (2011) Eun Shik Choi et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- BRCA1 tumour suppression occurs via heterochromatin-mediated silencing
- (2011) Quan Zhu et al. NATURE
- Assembly of Drosophila Centromeric Chromatin Proteins during Mitosis
- (2011) Barbara G. Mellone et al. PLoS Genetics
- Epigenetic engineering shows H3K4me2 is required for HJURP targeting and CENP-A assembly on a synthetic human kinetochore
- (2010) Jan H Bergmann et al. EMBO JOURNAL
- TERRA biogenesis, turnover and implications for function
- (2010) Sascha Feuerhahn et al. FEBS LETTERS
- Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences
- (2010) W.-H. Shang et al. GENOME RESEARCH
- A super-resolution map of the vertebrate kinetochore
- (2010) S. A. Ribeiro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA Binding of Centromere Protein C (CENPC) Is Stabilized by Single-Stranded RNA
- (2010) Yaqing Du et al. PLoS Genetics
- Histone modification patterns and epigenetic codes
- (2009) Andreas Lennartsson et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Centromeric Nucleosomes Induce Positive DNA Supercoils
- (2009) Takehito Furuyama et al. CELL
- The Argonaute CSR-1 and Its 22G-RNA Cofactors Are Required for Holocentric Chromosome Segregation
- (2009) Julie M. Claycomb et al. CELL
- DNMT3B interacts with constitutive centromere protein CENP-C to modulate DNA methylation and the histone code at centromeric regions
- (2009) Suhasni Gopalakrishnan et al. HUMAN MOLECULAR GENETICS
- Histone H3 Lysine 36 Dimethylation (H3K36me2) Is Sufficient to Recruit the Rpd3s Histone Deacetylase Complex and to Repress Spurious Transcription
- (2009) Bing Li et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- CENP-H–containing Complex Facilitates Centromere Deposition of CENP-A in Cooperation with FACT and CHD1
- (2009) Masahiro Okada et al. MOLECULAR BIOLOGY OF THE CELL
- Chromatin organization marks exon-intron structure
- (2009) Schraga Schwartz et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Non-coding murine centromeric transcripts associate with and potentiate Aurora B kinase
- (2009) Federica Ferri et al. NUCLEIC ACIDS RESEARCH
- Histone Modifications within the Human X Centromere Region
- (2009) Brankica Mravinac et al. PLoS One
- Synthetic Heterochromatin Bypasses RNAi and Centromeric Repeats to Establish Functional Centromeres
- (2009) A. Kagansky et al. SCIENCE
- Neocentromeres Form Efficiently at Multiple Possible Loci in Candida albicans
- (2009) Carrie Ketel et al. PLoS Genetics
- A new class of retroviral and satellite encoded small RNAs emanates from mammalian centromeres
- (2008) Dawn M. Carone et al. CHROMOSOMA
- Reversal of RNA Polymerase II Ubiquitylation by the Ubiquitin Protease Ubp3
- (2008) Kristian Kvint et al. MOLECULAR CELL
- Combinatorial patterns of histone acetylations and methylations in the human genome
- (2008) Zhibin Wang et al. NATURE GENETICS
- Imaging individual mRNA molecules using multiple singly labeled probes
- (2008) Arjun Raj et al. NATURE METHODS
- Epigenetic regulation of centromeric chromatin: old dogs, new tricks?
- (2008) Robin C. Allshire et al. NATURE REVIEWS GENETICS
- Heterochromatin and RNAi Are Required to Establish CENP-A Chromatin at Centromeres
- (2008) H. D. Folco et al. SCIENCE
- Heterochromatin Integrity Affects Chromosome Reorganization After Centromere Dysfunction
- (2008) K. Ishii et al. SCIENCE
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