Cryo-electron tomography on focused ion beam lamellae transforms structural cell biology
出版年份 2023 全文链接
标题
Cryo-electron tomography on focused ion beam lamellae transforms structural cell biology
作者
关键词
-
出版物
NATURE METHODS
Volume 20, Issue 4, Pages 499-511
出版商
Springer Science and Business Media LLC
发表日期
2023-03-14
DOI
10.1038/s41592-023-01783-5
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- ELI trifocal microscope: a precise system to prepare target cryo-lamellae for in situ cryo-ET study
- (2023) Shuoguo Li et al. NATURE METHODS
- Plasma FIB milling for the determination of structures in situ
- (2023) Casper Berger et al. Nature Communications
- Mean curvature motion facilitates the segmentation and surface visualization of electron tomograms
- (2022) Achilleas S. Frangakis JOURNAL OF STRUCTURAL BIOLOGY
- Architecture and self-assembly of the jumbo bacteriophage nuclear shell
- (2022) Thomas G. Laughlin et al. NATURE
- In situ structure of intestinal apical surface reveals nanobristles on microvilli
- (2022) Hao Zhu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- AI-based structure prediction empowers integrative structural analysis of human nuclear pores
- (2022) Shyamal Mosalaganti et al. SCIENCE
- A cryogenic, coincident fluorescence, electron and ion beam microscope
- (2022) Daan B Boltje et al. eLife
- Parallel cryo electron tomography on in situ lamellae
- (2022) Fabian Eisenstein et al. NATURE METHODS
- DNA origami signposts for identifying proteins on cell membranes by electron cryotomography
- (2021) Emma Silvester et al. CELL
- Endocytosed nanogold fiducials for improved in-situ cryo–electron tomography tilt-series alignment
- (2021) Casper Berger et al. JOURNAL OF STRUCTURAL BIOLOGY
- Structure of the Yersinia injectisome in intracellular host cell phagosomes revealed by cryo FIB electron tomography
- (2021) Casper Berger et al. JOURNAL OF STRUCTURAL BIOLOGY
- Multi-particle cryo-EM refinement with M visualizes ribosome-antibiotic complex at 3.5 Å in cells
- (2021) Dimitry Tegunov et al. NATURE METHODS
- Post-correlation on-lamella cryo-CLEM reveals the membrane architecture of lamellar bodies
- (2021) Steffen Klein et al. Communications Biology
- The molecular basis for sarcomere organization in vertebrate skeletal muscle
- (2021) Zhexin Wang et al. CELL
- A streamlined workflow for automated cryo focused ion beam milling
- (2021) Sebastian Tacke et al. JOURNAL OF STRUCTURAL BIOLOGY
- VHUT-cryo-FIB, a method to fabricate frozen hydrated lamellae from tissue specimens for in situ cryo-electron tomography
- (2021) Jianguo Zhang et al. JOURNAL OF STRUCTURAL BIOLOGY
- Highly accurate protein structure prediction with AlphaFold
- (2021) John Jumper et al. NATURE
- It’s noisy out there! A review of denoising techniques in cryo-electron tomography
- (2021) Achilleas S. Frangakis JOURNAL OF STRUCTURAL BIOLOGY
- Deep learning improves macromolecule identification in 3D cellular cryo-electron tomograms
- (2021) Emmanuel Moebel et al. NATURE METHODS
- Entropy-regularized deconvolution of cellular cryotransmission electron tomograms
- (2021) Matthew Croxford et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A modular platform for automated cryo-FIB workflows
- (2021) Sven Klumpe et al. eLife
- Template-free detection and classification of membrane-bound complexes in cryo-electron tomograms
- (2020) Antonio Martinez-Sanchez et al. NATURE METHODS
- Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells
- (2020) David P. Hoffman et al. SCIENCE
- Benchmarking tomographic acquisition schemes for high-resolution structural biology
- (2020) Beata Turoňová et al. Nature Communications
- Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography
- (2020) Felix R. Wagner et al. Nature Protocols
- Cryo‐FIB preparation of whole cells and tissue for cryo‐TEM: use of high‐pressure frozen specimens in tubes and planchets
- (2020) D.A.M. DE WINTER et al. JOURNAL OF MICROSCOPY
- Cryo-FIB-SEM as a promising tool for localizing proteins in 3D
- (2020) Daniele Spehner et al. JOURNAL OF STRUCTURAL BIOLOGY
- Cryogenic single-molecule fluorescence annotations for electron tomography reveal in situ organization of key proteins in Caulobacter
- (2020) Peter D. Dahlberg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A molecular pore spans the double membrane of the coronavirus replication organelle
- (2020) Georg Wolff et al. SCIENCE
- Cryoelectron Tomography Reveals Nanoscale Organization of the Cytoskeleton and Its Relation to Microtubule Curvature Inside Cells
- (2020) Saikat Chakraborty et al. STRUCTURE
- Reliable estimation of membrane curvature for cryo-electron tomography
- (2020) Maria Salfer et al. PLoS Computational Biology
- CryoSIM: super-resolution 3D structured illumination cryogenic fluorescence microscopy for correlated ultrastructural imaging
- (2020) Michael A. Phillips et al. Optica
- Architecture of the centriole cartwheel‐containing region revealed by cryo‐electron tomography
- (2020) Nikolai Klena et al. EMBO JOURNAL
- Cryo‐FIB‐lift‐out: practically impossible to practical reality
- (2020) CHRISTOPHER DAVID PARMENTER et al. JOURNAL OF MICROSCOPY
- In-cell architecture of the nuclear pore and snapshots of its turnover
- (2020) Matteo Allegretti et al. NATURE
- Single-particle cryo-EM at atomic resolution
- (2020) Takanori Nakane et al. NATURE
- Atomic-resolution protein structure determination by cryo-EM
- (2020) Ka Man Yip et al. NATURE
- A mammalian system for high-resolution imaging of intact cells by cryo-electron tomography
- (2020) Xia Li et al. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY
- Multi-scale 3D Cryo-Correlative Microscopy for Vitrified Cells
- (2020) Gong-Her Wu et al. STRUCTURE
- Topaz-Denoise: general deep denoising models for cryoEM and cryoET
- (2020) Tristan Bepler et al. Nature Communications
- SARS-CoV-2 structure and replication characterized by in situ cryo-electron tomography
- (2020) Steffen Klein et al. Nature Communications
- Rapid Tilt-Series Acquisition for Electron Cryotomography
- (2019) Georges Chreifi et al. JOURNAL OF STRUCTURAL BIOLOGY
- Correlative cryo super-resolution light and electron microscopy on mammalian cells using fluorescent proteins
- (2019) Maarten W. Tuijtel et al. Scientific Reports
- De Novo Structural Pattern Mining in Cellular Electron Cryotomograms
- (2019) Min Xu et al. STRUCTURE
- Cryo-SOFI enabling low-dose super-resolution correlative light and electron cryo-microscopy
- (2019) Felipe Moser et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Viral Capsid Trafficking along Treadmilling Tubulin Filaments in Bacteria
- (2019) Vorrapon Chaikeeratisak et al. CELL
- Structure and Function of a Bacterial Gap Junction Analog
- (2019) Gregor L. Weiss et al. CELL
- A cryo-FIB lift-out technique enables molecular-resolution cryo-ET within native Caenorhabditis elegans tissue
- (2019) Miroslava Schaffer et al. NATURE METHODS
- PIE-scope, integrated cryo-correlative light and FIB/SEM microscopy
- (2019) Sergey Gorelick et al. eLife
- The molecular architecture of engulfment during Bacillus subtilis sporulation
- (2019) Kanika Khanna et al. eLife
- Improved applicability and robustness of fast cryo-electron tomography data acquisition
- (2019) Fabian Eisenstein et al. JOURNAL OF STRUCTURAL BIOLOGY
- Mind the gap: Micro-expansion joints drastically decrease the bending of FIB-milled cryo-lamellae
- (2019) Georg Wolff et al. JOURNAL OF STRUCTURAL BIOLOGY
- Laser phase plate for transmission electron microscopy
- (2019) Osip Schwartz et al. NATURE METHODS
- The Architecture of Traveling Actin Waves Revealed by Cryo-Electron Tomography
- (2019) Marion Jasnin et al. STRUCTURE
- Tricalbin-Mediated Contact Sites Control ER Curvature to Maintain Plasma Membrane Integrity
- (2019) Javier Collado et al. DEVELOPMENTAL CELL
- Real-time cryo-electron microscopy data preprocessing with Warp
- (2019) Dimitry Tegunov et al. NATURE METHODS
- A complete data processing workflow for cryo-ET and subtomogram averaging
- (2019) Muyuan Chen et al. NATURE METHODS
- In situ structure determination at nanometer resolution using TYGRESS
- (2019) Kangkang Song et al. NATURE METHODS
- Tailoring cryo-electron microscopy grids by photo-micropatterning for in-cell structural studies
- (2019) Mauricio Toro-Nahuelpan et al. NATURE METHODS
- Direct visualization of degradation microcompartments at the ER membrane
- (2019) Sahradha Albert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- In situ Microfluidic Cryofixation for Cryo Focused Ion Beam Milling and Cryo Electron Tomography
- (2019) Marie Fuest et al. Scientific Reports
- In Situ Structure of Neuronal C9orf72 Poly-GA Aggregates Reveals Proteasome Recruitment
- (2018) Qiang Guo et al. CELL
- Aberration-corrected cryoimmersion light microscopy
- (2018) Raffaele Faoro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular and structural architecture of polyQ aggregates in yeast
- (2018) Anselm Gruber et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Robust workflow and instrumentation for cryo-focused ion beam milling of samples for electron cryotomography
- (2018) João M. Medeiros et al. ULTRAMICROSCOPY
- In situ architecture of the algal nuclear pore complex
- (2018) Shyamal Mosalaganti et al. Nature Communications
- Structure of the membrane-assembled retromer coat determined by cryo-electron tomography
- (2018) Oleksiy Kovtun et al. NATURE
- emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging
- (2018) Benjamin A. Himes et al. NATURE METHODS
- Uncharacterized Bacterial Structures Revealed by Electron Cryotomography
- (2017) Megan J. Dobro et al. JOURNAL OF BACTERIOLOGY
- Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4 Å
- (2017) Beata Turoňová et al. JOURNAL OF STRUCTURAL BIOLOGY
- Three-dimensional CTF correction improves the resolution of electron tomograms
- (2017) Michael Kunz et al. JOURNAL OF STRUCTURAL BIOLOGY
- Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins
- (2017) Miroslava Schaffer et al. JOURNAL OF STRUCTURAL BIOLOGY
- Automated tilt series alignment and tomographic reconstruction in IMOD
- (2017) David N. Mastronarde et al. JOURNAL OF STRUCTURAL BIOLOGY
- Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging
- (2017) Wim J.H. Hagen et al. JOURNAL OF STRUCTURAL BIOLOGY
- MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
- (2017) Shawn Q Zheng et al. NATURE METHODS
- eC-CLEM: flexible multidimensional registration software for correlative microscopies
- (2017) Perrine Paul-Gilloteaux et al. NATURE METHODS
- Convolutional neural networks for automated annotation of cellular cryo-electron tomograms
- (2017) Muyuan Chen et al. NATURE METHODS
- Proteasomes tether to two distinct sites at the nuclear pore complex
- (2017) Sahradha Albert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High-numerical-aperture cryogenic light microscopy for increased precision of superresolution reconstructions
- (2017) Marc Nahmani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- In situ architecture, function, and evolution of a contractile injection system
- (2017) Désirée Böck et al. SCIENCE
- Assembly of a nucleus-like structure during viral replication in bacteria
- (2017) Vorrapon Chaikeeratisak et al. SCIENCE
- Dissecting the molecular organization of the translocon-associated protein complex
- (2017) Stefan Pfeffer et al. Nature Communications
- Ion beam profiling from the interaction with a freestanding 2D layer
- (2017) Ivan Shorubalko et al. Beilstein Journal of Nanotechnology
- The structure of the COPI coat determined within the cell
- (2017) Yury S Bykov et al. eLife
- TheDynamopackage for tomography and subtomogram averaging: components forMATLAB, GPU computing and EC2 Amazon Web Services
- (2017) Daniel Castaño-Díez Acta Crystallographica Section D-Structural Biology
- Removing Contamination-Induced Reconstruction Artifacts from Cryo-electron Tomograms
- (2016) Jose-Jesus Fernandez et al. BIOPHYSICAL JOURNAL
- Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy
- (2016) Jan Arnold et al. BIOPHYSICAL JOURNAL
- Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION
- (2016) Tanmay A M Bharat et al. Nature Protocols
- Visualizing the molecular sociology at the HeLa cell nuclear periphery
- (2016) J. Mahamid et al. SCIENCE
- Large volume serial section tomography by Xe Plasma FIB dual beam microscopy
- (2016) T.L. Burnett et al. ULTRAMICROSCOPY
- Structural Basis of Vesicle Formation at the Inner Nuclear Membrane
- (2015) Christoph Hagen et al. CELL
- In SituLocalization of N and C Termini of Subunits of the Flagellar Nexin-Dynein Regulatory Complex (N-DRC) Using SNAP Tag and Cryo-electron Tomography
- (2015) Kangkang Song et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Native Immunogold Labeling of Cell Surface Proteins and Viral Glycoproteins for Cryo-Electron Microscopy and Cryo-Electron Tomography Applications
- (2015) Hong Yi et al. JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY
- A focused ion beam milling and lift-out approach for site-specific preparation of frozen-hydrated lamellas from multicellular organisms
- (2015) Julia Mahamid et al. JOURNAL OF STRUCTURAL BIOLOGY
- Structural analysis of multicellular organisms with cryo-electron tomography
- (2015) Jan Harapin et al. NATURE METHODS
- A structure of the COPI coat and the role of coat proteins in membrane vesicle assembly
- (2015) S. O. Dodonova et al. SCIENCE
- Robust membrane detection based on tensor voting for electron tomography
- (2014) Antonio Martinez-Sanchez et al. JOURNAL OF STRUCTURAL BIOLOGY
- Super-Resolution Microscopy Using Standard Fluorescent Proteins in Intact Cells under Cryo-Conditions
- (2014) Rainer Kaufmann et al. NANO LETTERS
- Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography
- (2014) Yi-Wei Chang et al. NATURE METHODS
- Volta potential phase plate for in-focus phase contrast transmission electron microscopy
- (2014) R. Danev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Resolution Revolution
- (2014) W. Kuhlbrandt SCIENCE
- MAVIS: An integrated system for live microscopy and vitrification
- (2013) Roman I. Koning et al. ULTRAMICROSCOPY
- Correlated cryo-fluorescence and cryo-electron microscopy with high spatial precision and improved sensitivity
- (2013) Martin Schorb et al. ULTRAMICROSCOPY
- Direct detection pays off for electron cryo-microscopy
- (2013) Nikolaus Grigorieff eLife
- A site-specific focused-ion-beam lift-out method for cryo Transmission Electron Microscopy
- (2012) Stefano Rubino et al. JOURNAL OF STRUCTURAL BIOLOGY
- Focused ion beam micromachining of eukaryotic cells for cryoelectron tomography
- (2012) A. Rigort et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Ferritin-Based Label for Cellular Electron Cryotomography
- (2011) Qing Wang et al. STRUCTURE
- Micromachining tools and correlative approaches for cellular cryo-electron tomography
- (2010) Alexander Rigort et al. JOURNAL OF STRUCTURAL BIOLOGY
- Exploring vitreous cryo-section-induced compression at the macromolecular level using electron cryo-tomography; 80S yeast ribosomes appear unaffected
- (2010) Jason Pierson et al. JOURNAL OF STRUCTURAL BIOLOGY
- Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells
- (2009) Linda F. van Driel et al. EUROPEAN JOURNAL OF CELL BIOLOGY
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