Whole genome resequencing reveal patterns of genetic variation within Colletotrichum acutatum species complex from rubber trees in China

Hybridization Facilitates Adaptive Evolution in Two Major Fungal Pathogens

(2020) Himeshi Samarasinghe et al.   Genes

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Pathogenic Adaptations Revealed by Comparative Genome Analyses of Two Colletotrichum spp., the Causal Agent of Anthracnose in Rubber Tree

(2020) Xianbao Liu et al.   Frontiers in Microbiology

Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest Pathogen Phytophthora ramorum

(2019) Angela L. Dale et al.   mBio

Population structure of Colletotrichum tanaceti in Australian pyrethrum reveals high evolutionary potential

(2019) Ruvini Vinodya Lelwala et al.   PHYTOPATHOLOGY

Whole Genome Re-sequencing Reveals Natural Variation and Adaptive Evolution of Phytophthora sojae

(2019) Xiong Zhang et al.   Frontiers in Microbiology

Optimal markers for the identification of Colletotrichum species

(2019) Willie Anderson dos Santos Vieira et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses

(2018) Xiaofei Liang et al.   PLoS One

Gene Flow between Divergent Cereal- and Grass-Specific Lineages of the Rice Blast Fungus Magnaporthe oryzae

(2018) Pierre Gladieux et al.   mBio

Colletotrichum Species Causing Anthracnose of Rubber Trees in China

(2018) Xianbao Liu et al.   Scientific Reports

Phylogenetic species recognition and hybridisation in Lasiodiplodia : A case study on species from baobabs

(2017) Elsie M. Cruywagen et al.   Fungal Biology

Distribution and Fungicide Sensitivity of Colletotrichum Species Complexes from Rubber Tree in Hainan, China

(2017) Xueren Cao et al.   PLANT DISEASE

Genera of phytopathogenic fungi: GOPHY 1

(2017) Y. Marin-Felix et al.   STUDIES IN MYCOLOGY

The Colletotrichum acutatum Species Complex as a Model System to Study Evolution and Host Specialization in Plant Pathogens

(2017) Riccardo Baroncelli et al.   Frontiers in Microbiology

Population Genomics of Fungal and Oomycete Pathogens

(2016) Niklaus J. Grünwald et al.   Annual Review of Phytopathology

Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum

(2016) Riccardo Baroncelli et al.   BMC GENOMICS

Formation of conidial anastomosis tubes and melanization of appressoria are antagonistic processes in Colletotrichum spp. from apple

(2016) Amanda Emy Gonçalves et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Colletotrichum species associated with jute (Corchorus capsularis L.) anthracnose in southeastern China

(2016) Xiaoping Niu et al.   Scientific Reports

Variant detection sensitivity and biases in whole genome and exome sequencing

(2014) Alison M Meynert et al.   BMC BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus

(2013) Wenming Zheng et al.   Nature Communications

Generators of Phenotypic Diversity in the Evolution of Pathogenic Microorganisms

(2013) Silvia Calo et al.   PLoS Pathogens

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

The Colletotrichum acutatum species complex

(2012) U. Damm et al.   STUDIES IN MYCOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

raxmlGUI: a graphical front-end for RAxML

(2011) Daniele Silvestro et al.   ORGANISMS DIVERSITY & EVOLUTION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Live-cell imaging of conidial fusion in the bean pathogen, Colletotrichum lindemuthianum

(2009) Francine H. Ishikawa et al.   Fungal Biology

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Parasexual Cycle in Candida albicans Provides an Alternative Pathway to Meiosis for the Formation of Recombinant Strains

(2008) Anja Forche et al.   PLOS BIOLOGY