Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses

Unveiling the Biosynthetic Pathway of the Ribosomally Synthesized and Post-translationally Modified Peptide Ustiloxin B in Filamentous Fungi

(2016) Ying Ye et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications

(2016) Adiphol Dilokpimol et al.   Biotechnology for Biofuels

Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum

(2016) Riccardo Baroncelli et al.   BMC GENOMICS

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

(2016) Kei Hiruma et al.   CELL

The cyclochlorotine mycotoxin is produced by the nonribosomal peptide synthetase CctN in Talaromyces islandicus (‘Penicillium islandicum ’)

(2016) Thomas Schafhauser et al.   ENVIRONMENTAL MICROBIOLOGY

Genus-Wide Comparative Genome Analyses ofColletotrichumSpecies Reveal Specific Gene Family Losses and Gains during Adaptation to Specific Infection Lifestyles

(2016) Pamela Gan et al.   Genome Biology and Evolution

Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen

(2016) Luigi Faino et al.   GENOME RESEARCH

Plant-like biosynthesis of isoquinoline alkaloids in Aspergillus fumigatus

(2016) Joshua A Baccile et al.   Nature Chemical Biology

Genetic Structure of Colletotrichum fructicola Associated to Apple Bitter Rot and Glomerella Leaf Spot in Southern Brazil and Uruguay

(2016) Mathias F. Rockenbach et al.   PHYTOPATHOLOGY

The Evolution of Orphan Regions in Genomes of a Fungal Pathogen of Wheat

(2016) Clémence Plissonneau et al.   mBio

Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

(2016) Stéphane Hacquard et al.   Nature Communications

Peltaster fructicola genome reveals evolution from an invasive phytopathogen to an ectophytic parasite

(2016) Chao Xu et al.   Scientific Reports

Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae

(2016) Bastian Daniel et al.   PLoS One

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The two-speed genomes of filamentous pathogens: waltz with plants

(2015) Suomeng Dong et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

FunRich: An open access standalone functional enrichment and interaction network analysis tool

(2015) Mohashin Pathan et al.   PROTEOMICS

Prevalence of transcription factors in ascomycete and basidiomycete fungi

(2014) Richard B Todd et al.   BMC GENOMICS

Fungal Cytochrome P450 Monooxygenases: Their Distribution, Structure, Functions, Family Expansion, and Evolutionary Origin

(2014) Wanping Chen et al.   Genome Biology and Evolution

Estimating the Phanerozoic history of the Ascomycota lineages: Combining fossil and molecular data

(2014) Christina Beimforde et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Colletotrichum gigasporum species complex

(2014) F. Liu et al.   PERSOONIA

Characterization of Glomerella Strains Recovered from Anthracnose Lesions on Common Bean Plants in Brazil

(2014) Quélen L. Barcelos et al.   PLoS One

Quiescent and Necrotrophic Lifestyle Choice During Postharvest Disease Development

(2013) Dov Prusky et al.   Annual Review of Phytopathology

Global Aspects of pacC Regulation of Pathogenicity Genes in Colletotrichum gloeosporioides as Revealed by Transcriptome Analysis

(2013) Noam Alkan et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Description of Gibellulopsis chrysanthemi sp. nov. from leaves of garland chrysanthemum

(2013) Yuuri Hirooka et al.   MYCOLOGICAL PROGRESS

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

GapFiller: a de novo assembly approach to fill the gap within paired reads

(2012) Francesca Nadalin et al.   BMC BIOINFORMATICS

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

Comparative genomic and transcriptomic analyses reveal the hemibiotrophic stage shift ofColletotrichumfungi

(2012) Pamela Gan et al.   NEW PHYTOLOGIST

The Colletotrichum gloeosporioides species complex

(2012) B.S. Weir et al.   STUDIES IN MYCOLOGY

Colletotrichum – current status and future directions

(2012) P.F. Cannon et al.   STUDIES IN MYCOLOGY

Sequential Delivery of Host-Induced Virulence Effectors by Appressoria and Intracellular Hyphae of the Phytopathogen Colletotrichum higginsianum

(2012) Jochen Kleemann et al.   PLoS Pathogens

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Functional Analysis of the Kinome of the Wheat Scab Fungus Fusarium graminearum

(2011) Chenfang Wang et al.   PLoS Pathogens

Subcutaneous infection of a cat by Colletotrichum species

(2010) Randolph L. Winter et al.   JOURNAL OF FELINE MEDICINE AND SURGERY

pH Regulation of Ammonia Secretion byColletotrichum gloeosporioidesand Its Effect on Appressorium Formation and Pathogenicity

(2010) Itay Miyara et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH