Whole Genome Re-sequencing Reveals Natural Variation and Adaptive Evolution of Phytophthora sojae

Structure and transcriptional regulation of the major intrinsic protein gene family in grapevine

(2018) Darren Chern Jan Wong et al.   BMC GENOMICS

The impact of transposable elements in adaptive evolution

(2018) Lukas Schrader et al.   MOLECULAR ECOLOGY

Genome-wide identification of long non-coding RNAs suggests a potential association with effector gene transcription in Phytophthora sojae

(2018) Yang Wang et al.   MOLECULAR PLANT PATHOLOGY

Conserved RxLR Effectors From Oomycetes Hyaloperonospora arabidopsidis and Phytophthora sojae Suppress PAMP- and Effector-Triggered Immunity in Diverse Plants

(2018) Devdutta Deb et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates

(2018) Geneviève Arsenault-Labrecque et al.   BMC BIOLOGY

Natural allelic variations provide insights into host adaptation of Phytophthora avirulence effector PsAvr3c

(2018) Jie Huang et al.   NEW PHYTOLOGIST

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Conserved RXLR Effector Genes of Phytophthora infestans Expressed at the Early Stage of Potato Infection Are Suppressive to Host Defense

(2017) Junliang Yin et al.   Frontiers in Plant Science

The Genome Biology of Effector Gene Evolution in Filamentous Plant Pathogens

(2016) Andrea Sánchez-Vallet et al.   Annual Review of Phytopathology

Population Genomics of Fungal and Oomycete Pathogens

(2016) Niklaus J. Grünwald et al.   Annual Review of Phytopathology

Phenotypic evaluation and genetic dissection of resistance to Phytophthora sojae in the Chinese soybean mini core collection

(2016) Jing Huang et al.   BMC GENETICS

The genetic basis of local adaptation for pathogenic fungi in agricultural ecosystems

(2016) Daniel Croll et al.   MOLECULAR ECOLOGY

Sequencing of the Litchi Downy Blight Pathogen Reveals It Is aPhytophthoraSpecies With Downy Mildew-Like Characteristics

(2016) Wenwu Ye et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Comparative Genomic Analysis among Four Representative Isolates of Phytophthora sojae Reveals Genes under Evolutionary Selection

(2016) Wenwu Ye et al.   Frontiers in Microbiology

The two-speed genomes of filamentous pathogens: waltz with plants

(2015) Suomeng Dong et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Oomycete Interactions with Plants: Infection Strategies and Resistance Principles

(2015) Stuart Fawke et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Recent Progress in RXLR Effector Research

(2015) Ryan G. Anderson et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Phytophthoraeffector targets a novel component of small RNA pathway in plants to promote infection

(2015) Yongli Qiao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New subfamilies of major intrinsic proteins in fungi suggest novel transport properties in fungal channels: implications for the host-fungal interactions

(2014) Ravi Kumar Verma et al.   BMC EVOLUTIONARY BIOLOGY

Effectors as Tools in Disease Resistance Breeding Against Biotrophic, Hemibiotrophic, and Necrotrophic Plant Pathogens

(2014) Vivianne G. A. A. Vleeshouwers et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome Re-Sequencing and Functional Analysis Places the Phytophthora sojae Avirulence Genes Avr1c and Avr1a in a Tandem Repeat at a Single Locus

(2014) Ren Na et al.   PLoS One

HemI: A Toolkit for Illustrating Heatmaps

(2014) Wankun Deng et al.   PLoS One

NADH: flavin oxidoreductase/NADH oxidase and ROS regulate microsclerotium development in Nomuraea rileyi

(2014) Juanjuan Liu et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Transport proteins of parasitic protists and their role in nutrient salvage

(2014) Paul Dean et al.   Frontiers in Plant Science

The epichloae: alkaloid diversity and roles in symbiosis with grasses

(2013) Christopher L Schardl et al.   CURRENT OPINION IN PLANT BIOLOGY

Two RxLR Avirulence Genes inPhytophthora sojaeDetermine SoybeanRps1k-Mediated Disease Resistance

(2013) Tianqiao Song et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Deletion of the Phytophthora sojae Avirulence Gene Avr1d Causes Gain of Virulence on Rps1d

(2013) Ren Na et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A Public Program to Evaluate Commercial Soybean Cultivars for Pathogen and Pest Resistance

(2013) Shilpi Chawla et al.   PLANT DISEASE

Correction for Bart et al., High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance

(2013)   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pivoting the Plant Immune System from Dissection to Deployment

(2013) J. L. Dangl et al.   SCIENCE

Transgenerational gene silencing causes gain of virulence in a plant pathogen

(2013) Dinah Qutob et al.   Nature Communications

Distinctive Expansion of Potential Virulence Genes in the Genome of the Oomycete Fish Pathogen Saprolegnia parasitica

(2013) Rays H. Y. Jiang et al.   PLoS Genetics

PhytophthoraBeyond Agriculture

(2012) Everett M. Hansen et al.   Annual Review of Phytopathology

Mechanisms and Evolution of Virulence in Oomycetes

(2012) Rays H.Y. Jiang et al.   Annual Review of Phytopathology

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Phytopathogen Effectors Subverting Host Immunity: Different Foes, Similar Battleground

(2012) Daolong Dou et al.   Cell Host & Microbe

Genome Sequencing and Mapping Reveal Loss of Heterozygosity as a Mechanism for Rapid Adaptation in the Vegetable Pathogen Phytophthora capsici

(2012) Kurt H. Lamour et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome evolution in filamentous plant pathogens: why bigger can be better

(2012) Sylvain Raffaele et al.   NATURE REVIEWS MICROBIOLOGY

The RxLR effector Avh241 from Phytophthora sojae requires plasma membrane localization to induce plant cell death

(2012) Xiaoli Yu et al.   NEW PHYTOLOGIST

Reactive Oxygen Species in Phytopathogenic Fungi: Signaling, Development, and Disease

(2011) Jens Heller et al.   Annual Review of Phytopathology

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Evolution in agriculture: the application of evolutionary approaches to the management of biotic interactions in agro-ecosystems

(2011) Peter H. Thrall et al.   Evolutionary Applications

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Programming and Functional Interactions within thePhytophthora sojaeRXLR Effector Repertoire

(2011) Qunqing Wang et al.   PLANT CELL

Sequence Variants of the Phytophthora sojae RXLR Effector Avr3a/5 Are Differentially Recognized by Rps3a and Rps5 in Soybean

(2011) Suomeng Dong et al.   PLoS One

Gene Gain and Loss during Evolution of Obligate Parasitism in the White Rust Pathogen of Arabidopsis thaliana

(2011) Eric Kemen et al.   PLOS BIOLOGY

Phytophthora sojae Avirulence Effector Avr3b is a Secreted NADH and ADP-ribose Pyrophosphorylase that Modulates Plant Immunity

(2011) Suomeng Dong et al.   PLoS Pathogens

Different Domains of Phytophthora sojae Effector Avr4/6 Are Recognized by Soybean Resistance Genes Rps4 and Rps6

(2010) Daolong Dou et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

(2010) L. Baxter et al.   SCIENCE

Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage

(2010) S. Raffaele et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

(2010) C André Lévesque et al.   GENOME BIOLOGY

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Personalized copy number and segmental duplication maps using next-generation sequencing

(2009) Can Alkan et al.   NATURE GENETICS

The Phytophthora sojae Avirulence Locus Avr3c Encodes a Multi-Copy RXLR Effector with Sequence Polymorphisms among Pathogen Strains

(2009) Suomeng Dong et al.   PLoS One

NADPH Oxidases Are Involved in Differentiation and Pathogenicity in Botrytis cinerea

(2008) Nadja Segmüller et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Effector Genomics Accelerates Discovery and Functional Profiling of Potato Disease Resistance and Phytophthora Infestans Avirulence Genes

(2008) Vivianne G. A. A. Vleeshouwers et al.   PLoS One

RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members

(2008) R. H. Y. Jiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA