Dynamic microbial community composition, co-occurrence pattern and assembly in rhizosphere and bulk soils along a coniferous plantation chronosequence

Maize root exudate composition alters rhizosphere bacterial community to control hotspots of hydrolase activity in response to nitrogen supply

(2022) Cunkang Hao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial communities along the soil-root continuum are determined by root anatomical boundaries, soil properties, and root exudation

(2022) Yi Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Host Plant Selection Imprints Structure and Assembly of Fungal Community along the Soil-Root Continuum

(2022) Fengqiao Li et al.   mSystems

The response of soil microbial communities to soil erodibility depends on the plant and soil properties in semiarid regions

(2021) Min Zhang et al.   LAND DEGRADATION & DEVELOPMENT

Changes in assembly processes of soil microbial communities during secondary succession in two subtropical forests

(2021) Lan Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Seasonal Changes in Pinus tabuliformis Root-Associated Fungal Microbiota Drive N and P Cycling in Terrestrial Ecosystem

(2021) Hai-Hua Wang et al.   Frontiers in Microbiology

Erosion reduces soil microbial diversity, network complexity and multifunctionality

(2021) Liping Qiu et al.   ISME Journal

Specialized metabolic functions of keystone taxa sustain soil microbiome stability

(2021) Weibing Xun et al.   Microbiome

Assembly of abundant and rare bacterial and fungal sub-communities in different soil aggregate sizes in an apple orchard treated with cover crop and fertilizer

(2021) Wei Zheng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial assembly and association network in watermelon rhizosphere after soil fumigation for Fusarium wilt control

(2021) An-Hui Ge et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Rare prokaryotic sub-communities dominate the complexity of ecological networks and soil multinutrient cycling during long-term secondary succession in China's Loess Plateau

(2021) Duntao Shu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Outbreaks of Root Rot Disease in Different Aged American Ginseng Plants Are Associated With Field Microbial Dynamics

(2021) Li Ji et al.   Frontiers in Microbiology

Changes in microbial metabolic C- and N- limitations in the rhizosphere and bulk soils along afforestation chronosequence in desertified ecosystems

(2021) Boyuan Bi et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

N-induced root exudates mediate the rhizosphere fungal assembly and affect species coexistence

(2021) Jie Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil bacteria and fungi respond differently to plant diversity and plant family composition during the secondary succession of abandoned farmland on the Loess Plateau, China

(2020) Zekun Zhong et al.   PLANT AND SOIL

Long-term effects of vegetation and soil on the microbial communities following afforestation of farmland with Robinia pseudoacacia plantations

(2020) Miaoping Xu et al.   GEODERMA

Variations of soil bacterial diversity and metabolic function with tidal flat elevation gradient in an artificial mangrove wetland

(2020) Yichen Yin et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Elevation rather than season determines the assembly and co-occurrence patterns of soil bacterial communities in forest ecosystems of Mount Gongga

(2020) Bingjian Zhu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effect of Inorganic N Top Dressing and Trichoderma harzianum Seed-Inoculation on Crop Yield and the Shaping of Root Microbial Communities of Wheat Plants Cultivated Under High Basal N Fertilization

(2020) María Illescas et al.   Frontiers in Plant Science

Temporal and Cultivar-Specific Effects on Potato Root and Soil Fungal Diversity

(2020) Kaire Loit et al.   Agronomy-Basel

Soil carbon and associated bacterial community shifts driven by fine root traits along a chronosequence of Moso bamboo (Phyllostachys edulis) plantations in subtropical China

(2020) Chuanbao Yang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Forest management practices of Pinus tabulaeformis plantations alter soil organic carbon stability by adjusting microbial characteristics on the Loess Plateau of China

(2020) Yahui Song et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Response of rhizosphere microbial communities to plant succession along a grassland chronosequence in a semiarid area

(2019) Zilin Song et al.   JOURNAL OF SOILS AND SEDIMENTS

Temporal and spatial succession and dynamics of soil fungal communities in restored grassland on the Loess Plateau in China

(2019) Yang Liu et al.   LAND DEGRADATION & DEVELOPMENT

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Interactions between plants and soil shaping the root microbiome under abiotic stress

(2019) Kyle Hartman et al.   BIOCHEMICAL JOURNAL

Freshwater Sordariomycetes

(2019) Zong-Long Luo et al.   FUNGAL DIVERSITY

Decreased temporary turnover of bacterial communities along soil depth gradient during a 35-year grazing exclusion period in a semiarid grassland

(2019) Chao Zhang et al.   GEODERMA

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Dispersal limitation relative to environmental filtering governs the vertical small‐scale assembly of soil microbiomes during restoration

(2019) Weimin Chen et al.   JOURNAL OF APPLIED ECOLOGY

Cultivar-specific response of bacterial community to cadmium contamination in the rhizosphere of rice ( Oryza sativa L.)

(2018) Dandi Hou et al.   ENVIRONMENTAL POLLUTION

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Contrasting effects of ectomycorrhizal fungi on early and late stage decomposition in a boreal forest

(2018) Erica Sterkenburg et al.   ISME Journal

Effects of thinning intensity on understory vegetation and soil microbial communities of a mature Chinese pine plantation in the Loess Plateau

(2018) Peng Dang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil pH correlates with the co-occurrence and assemblage process of diazotrophic communities in rhizosphere and bulk soils of wheat fields

(2018) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Response of the rhizosphere microbial community to fine root and soil parameters following Robinia pseudoacacia L. afforestation

(2018) Jinliang Liu et al.   APPLIED SOIL ECOLOGY

Phosphorus-mineralizing Communities Reflect Nutrient-Rich Characteristics in Japanese Arable Andisols

(2018) Kazumori Mise et al.   MICROBES AND ENVIRONMENTS

Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil

(2018) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term nitrogen fertilization impacts soil fungal and bacterial community structures in a dryland soil of Loess Plateau in China

(2017) Jinshan Liu et al.   JOURNAL OF SOILS AND SEDIMENTS

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields

(2017) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla

(2017) Eric D. Becraft et al.   Frontiers in Microbiology

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Community assembly and coexistence in communities of arbuscular mycorrhizal fungi

(2016) Kriszta Vályi et al.   ISME Journal

Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere

(2016) Yan Yan et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management

(2016) R. Poudel et al.   PHYTOPATHOLOGY

Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns

(2016) Shuo Jiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

C/N Ratio Drives Soil Actinobacterial Cellobiohydrolase Gene Diversity

(2015) Alexandre B. de Menezes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The role of microorganisms in the ecological functions of soils

(2015) T. G. Dobrovol’skaya et al.   EURASIAN SOIL SCIENCE

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

(2015) Armin Erlacher et al.   Frontiers in Microbiology

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Small-scale environmental variation influences whether coral-dwelling fish promote or impede coral growth

(2014) T. J. Chase et al.   OECOLOGIA

Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes

(2014) Y. Zeng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Ecological determinism increases with organism size

(2012) Vinicius F. Farjalla et al.   ECOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

(2010) Paul G. Dennis et al.   FEMS MICROBIOLOGY ECOLOGY

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework

(2009) Shubha N. Pandit et al.   ECOLOGY

Spatial autocorrelation and dispersal limitation in freshwater organisms

(2008) Jonathan B. Shurin et al.   OECOLOGIA