标题
Metavirome of 31 tick species provides a compendium of 1,801 RNA virus genomes
作者
关键词
-
出版物
Nature Microbiology
Volume 8, Issue 1, Pages 162-173
出版商
Springer Science and Business Media LLC
发表日期
2023-01-06
DOI
10.1038/s41564-022-01275-w
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Tick Immune System: What Is Known, the Interconnections, the Gaps, and the Challenges
- (2021) Andréa C. Fogaça et al. Frontiers in Immunology
- Sensitive protein alignments at tree-of-life scale using DIAMOND
- (2021) Benjamin Buchfink et al. NATURE METHODS
- A novel nairovirus associated with acute febrile illness in Hokkaido, Japan
- (2021) Fumihiro Kodama et al. Nature Communications
- Tick virome diversity in Hubei Province, China, and the influence of host ecology
- (2021) Lin Xu et al. Virus Evolution
- Sustained RNA virome diversity in Antarctic penguins and their ticks
- (2020) Michelle Wille et al. ISME Journal
- Viral zoonotic risk is homogenous among taxonomic orders of mammalian and avian reservoir hosts
- (2020) Nardus Mollentze et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Circumpolar diversification of the Ixodes uriae tick virome
- (2020) John H.-O. Pettersson et al. PLoS Pathogens
- Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome
- (2020) Yuri I. Wolf et al. Nature Microbiology
- Nairobi Sheep Disease Virus: A Historical and Epidemiological Perspective
- (2020) Stephanie Krasteva et al. Frontiers in Veterinary Science
- Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities
- (2020) Na Jia et al. CELL
- Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries
- (2019) Maria Asplund et al. CLINICAL MICROBIOLOGY AND INFECTION
- The Ecology of New Constituents of the Tick Virome and Their Relevance to Public Health
- (2019) Kurt J. Vandegrift et al. Viruses-Basel
- Viral Diversity of Tick Species Parasitizing Cattle and Dogs in Trinidad and Tobago
- (2019) Stephen Sameroff et al. Scientific Reports
- TreeCluster: Clustering biological sequences using phylogenetic trees
- (2019) Metin Balaban et al. PLoS One
- Identification of Novel Viruses in Amblyomma americanum , Dermacentor variabilis , and Ixodes scapularis Ticks
- (2018) Rafal Tokarz et al. mSphere
- Tick-Borne Viruses
- (2018) Junming Shi et al. VIROLOGICA SINICA
- Tickborne Diseases — Confronting a Growing Threat
- (2018) Catharine I. Paules et al. NEW ENGLAND JOURNAL OF MEDICINE
- Phylogeography of Ticks (Acari: Ixodida)
- (2018) Lorenza Beati et al. Annual Review of Entomology
- Extensive Diversity of RNA Viruses in Australian Ticks
- (2018) Erin Harvey et al. JOURNAL OF VIROLOGY
- Predicting reservoir hosts and arthropod vectors from evolutionary signatures in RNA virus genomes
- (2018) Simon A. Babayan et al. SCIENCE
- Origins and Evolution of the Global RNA Virome
- (2018) Yuri I. Wolf et al. mBio
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Characterizing the virome of Ixodes ricinus ticks from northern Europe
- (2017) John H.-O. Pettersson et al. Scientific Reports
- Identification of Diverse Mycoviruses through Metatranscriptomics Characterization of the Viromes of Five Major Fungal Plant Pathogens
- (2016) Shin-Yi Lee Marzano et al. JOURNAL OF VIROLOGY
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Redefining the invertebrate RNA virosphere
- (2016) Mang Shi et al. NATURE
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses
- (2015) Mang Shi et al. JOURNAL OF VIROLOGY
- Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses
- (2015) Ci-Xiu Li et al. eLife
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Vertical transmission of arboviruses in mosquitoes: A historical perspective
- (2014) Sebastian Lequime et al. INFECTION GENETICS AND EVOLUTION
- Consequences of in vitro host shift for St. Louis encephalitis virus
- (2014) A. T. Ciota et al. JOURNAL OF GENERAL VIROLOGY
- Virome Analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks Reveals Novel Highly Divergent Vertebrate and Invertebrate Viruses
- (2014) R. Tokarz et al. JOURNAL OF VIROLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors
- (2014) X.-C. Qin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Effects of Host Diversity on Infectious Disease
- (2011) Richard S. Ostfeld et al. Annual Review of Ecology Evolution and Systematics
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Impacts of biodiversity on the emergence and transmission of infectious diseases
- (2010) Felicia Keesing et al. NATURE
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Arbovirus evolution in vivo is constrained by host alternation
- (2008) L. L. Coffey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Correlating viral phenotypes with phylogeny: Accounting for phylogenetic uncertainty
- (2007) Joe Parker et al. INFECTION GENETICS AND EVOLUTION
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search