Probiotic effects on immunity and microbiome in HIV-1 discordant patients

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

(2021) Francesco Beghini et al.   eLife

A Randomized, Placebo-Controlled Trial Assessing the Effect of VISBIOME ES Probiotic in People With HIV on Antiretroviral Therapy

(2021) Rachel M Presti et al.   Open Forum Infectious Diseases

Prebiotics metabolism by gut-isolated probiotics

(2020) Muhamad Hanif Rawi et al.   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

How Probiotics Affect the Microbiota

(2020) Grégoire Wieërs et al.   Frontiers in Cellular and Infection Microbiology

Recent Advances in Metabolic Pathways of Sulfate Reduction in Intestinal Bacteria

(2020) Ivan Kushkevych et al.   Cells

Human Immunodeficiency Virus–Infected Immunological Nonresponders Have Colon-Restricted Gut Mucosal Immune Dysfunction

(2020) Malin Holm Meyer-Myklestad et al.   JOURNAL OF INFECTIOUS DISEASES

Long-term evolution of CD4 cell count in patients under cART

(2019) Nikos Pantazis et al.   AIDS

Effects of Immunonutrition in Advanced Human Immunodeficiency Virus Disease: A Randomized Placebo-controlled Clinical Trial (Promaltia Study)

(2018) Sergio Serrano-Villar et al.   CLINICAL INFECTIOUS DISEASES

Recent progress in understanding HIV reservoirs

(2018) Hsiao-Hsuan Kuo et al.   Current Opinion in HIV and AIDS

The molecular mechanism for activating IgA production by Pediococcus acidilactici K15 and the clinical impact in a randomized trial

(2018) Tadaomi Kawashima et al.   Scientific Reports

Enrichment of gut-derived Fusobacterium is associated with suboptimal immune recovery in HIV-infected individuals

(2018) Soo Ching Lee et al.   Scientific Reports

Sulfate-reducing bacteria stimulate gut immune responses and contribute to inflammation in experimental colitis

(2017) Vanessa Ribeiro Figliuolo et al.   LIFE SCIENCES

Microbiota and Probiotics in Health and HIV Infection

(2017) et al.   Nutrients

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

(2016) Maria Elena Martino et al.   ENVIRONMENTAL MICROBIOLOGY

Probiotics for prevention and treatment of respiratory tract infections in children

(2016) Yizhong Wang et al.   MEDICINE

An LGG-derived protein promotes IgA production through upregulation of APRIL expression in intestinal epithelial cells

(2016) Y Wang et al.   Mucosal Immunology

The effects of prebiotics on microbial dysbiosis, butyrate production and immunity in HIV-infected subjects

(2016) S Serrano-Villar et al.   Mucosal Immunology

Comparative Effect of the I3.1 Probiotic Formula in Two Animal Models of Colitis

(2016) Violeta Lorén et al.   Probiotics and Antimicrobial Proteins

Reduced Levels of D-dimer and Changes in Gut Microbiota Composition After Probiotic Intervention in HIV-Infected Individuals on Stable ART

(2015) Birgitte Stiksrud et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Immunosuppressive Tryptophan Catabolism and Gut Mucosal Dysfunction Following Early HIV Infection

(2015) Mohammad-Ali Jenabian et al.   JOURNAL OF INFECTIOUS DISEASES

Gut-Resident Lactobacillus Abundance Associates with IDO1 Inhibition and Th17 Dynamics in SIV-Infected Macaques

(2015) Ivan Vujkovic-Cvijin et al.   Cell Reports

HIV infection

(2015) Steven G. Deeks et al.   Nature Reviews Disease Primers

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Cell death by pyroptosis drives CD4 T-cell depletion in HIV-1 infection

(2013) Gilad Doitsh et al.   NATURE

Dysbiosis of the Gut Microbiota Is Associated with HIV Disease Progression and Tryptophan Catabolism

(2013) Ivan Vujkovic-Cvijin et al.   Science Translational Medicine

In VitroandIn VivoSurvival and Colonic Adhesion ofPediococcus acidilacticiMTCC5101 in Human Gut

(2013) Praveen P. Balgir et al.   Biomed Research International

Th17 cells and regulatory T cells in elite control over HIV and SIV

(2011) Dennis J Hartigan-OʼConnor et al.   Current Opinion in HIV and AIDS

Nadir CD4 T Cell Count as Predictor and High CD4 T Cell Intrinsic Apoptosis as Final Mechanism of Poor CD4 T Cell Recovery in Virologically Suppressed HIV‐Infected Patients: Clinical Implications

(2010) Eugènia Negredo et al.   CLINICAL INFECTIOUS DISEASES

Th17 Cytokines and the Gut Mucosal Barrier

(2010) Christoph Blaschitz et al.   JOURNAL OF CLINICAL IMMUNOLOGY

Lactobacillus plantarum lipoteichoic acid down-regulated Shigella flexneri peptidoglycan-induced inflammation

(2010) Han Geun Kim et al.   MOLECULAR IMMUNOLOGY

Th17 and regulatory T cells: implications for AIDS pathogenesis

(2010) Bittoo Kanwar et al.   Current Opinion in HIV and AIDS

The Absence of CD4+T Cell Count Recovery Despite Receipt of Virologically Suppressive Highly Active Antiretroviral Therapy: Clinical Risk, Immunological Gaps, and Therapeutic Options

(2009) Lidia Gazzola et al.   CLINICAL INFECTIOUS DISEASES

Enteric defensins are essential regulators of intestinal microbial ecology

(2009) Nita H Salzman et al.   NATURE IMMUNOLOGY

HIV reservoir size and persistence are driven by T cell survival and homeostatic proliferation

(2009) Nicolas Chomont et al.   NATURE MEDICINE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Microbial translocation is associated with sustained failure in CD4+ T-cell reconstitution in HIV-infected patients on long-term highly active antiretroviral therapy

(2008) Giulia Marchetti et al.   AIDS

Ecological Role of Lactobacilli in the Gastrointestinal Tract: Implications for Fundamental and Biomedical Research

(2008) J. Walter   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Life expectancy of individuals on combination antiretroviral therapy in high-income countries: a collaborative analysis of 14 cohort studies

(2008)   LANCET