Defocus Corrected Large Area Cryo-EM (DeCo-LACE) for label-free detection of molecules across entire cell sections

Montage electron tomography of vitrified specimens

(2022) Ariana Peck et al.   JOURNAL OF STRUCTURAL BIOLOGY

Waffle Method: A general and flexible approach for improving throughput in FIB-milling

(2022) Kotaro Kelley et al.   Nature Communications

Beam image-shift accelerated data acquisition for near-atomic resolution single-particle cryo-electron tomography

(2021) Jonathan Bouvette et al.   Nature Communications

Locating macromolecular assemblies in cells by 2D template matching with cisTEM

(2021) Bronwyn A Lucas et al.   eLife

Cryo-TEM simulations of amorphous radiation-sensitive samples using multislice wave propagation

(2021) Benjamin Himes et al.   IUCrJ

SciPy 1.0: fundamental algorithms for scientific computing in Python

(2020) Pauli Virtanen et al.   NATURE METHODS

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

Protein Synthesis in the Developing Neocortex at Near-Atomic Resolution Reveals Ebp1-Mediated Neuronal Proteostasis at the 60S Tunnel Exit

(2020) Matthew L. Kraushar et al.   MOLECULAR CELL

Hallmarks of ribosomopathies

(2019) Kim R Kampen et al.   NUCLEIC ACIDS RESEARCH

Open collaborative writing with Manubot

(2019) Daniel S. Himmelstein et al.   PLoS Computational Biology

High-quality, high-throughput cryo-electron microscopy data collection via beam tilt and astigmatism-free beam-image shift

(2019) Chunling Wu et al.   JOURNAL OF STRUCTURAL BIOLOGY

Advances in Single Particle Analysis Data Acquisition

(2019) Stan Konings et al.   MICROSCOPY AND MICROANALYSIS

Diagnostic and prognostic implications of ribosomal protein transcript expression patterns in human cancers

(2018) James M. Dolezal et al.   BMC CANCER

Routine determination of ice thickness for cryo-EM grids

(2018) William J. Rice et al.   JOURNAL OF STRUCTURAL BIOLOGY

Shedding light on the cell biology of extracellular vesicles

(2018) Guillaume van Niel et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

cisTEM, user-friendly software for single-particle image processing

(2018) Timothy Grant et al.   eLife

High resolution single particle cryo-electron microscopy using beam-image shift

(2018) Anchi Cheng et al.   JOURNAL OF STRUCTURAL BIOLOGY

Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins

(2017) Miroslava Schaffer et al.   JOURNAL OF STRUCTURAL BIOLOGY

Single-protein detection in crowded molecular environments in cryo-EM images

(2017) J Peter Rickgauer et al.   eLife

Inhibition of Dihydroorotate Dehydrogenase Overcomes Differentiation Blockade in Acute Myeloid Leukemia

(2016) David B. Sykes et al.   CELL

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6

(2015) Timothy Grant et al.   eLife

scikit-image: image processing in Python

(2014) Stéfan van der Walt et al.   PeerJ

Opening windows into the cell: focused-ion-beam milling for cryo-electron tomography

(2013) Elizabeth Villa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Electron tomography of cells

(2011) Lu Gan et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

(2009) Noelle M Griffin et al.   NATURE BIOTECHNOLOGY