Multi-locus phylogeny and species delimitations of the striped-back shrew group (Eulipotyphla: Soricidae): Implications for cryptic diversity, taxonomy and multiple speciation patterns

Multilocus phylogeny and cryptic diversity of white-toothed shrews (Mammalia, Eulipotyphla, Crocidura) in China

(2020) Shunde Chen et al.   BMC EVOLUTIONARY BIOLOGY

Genomic evidence for two phylogenetic species and long-term population bottlenecks in red pandas

(2020) Yibo Hu et al.   Science Advances

Unraveling the systematics and evolution of the ‘Geophagus’ brasiliensis (Cichliformes: Cichlidae) species complex

(2020) Leandro Araujo Argolo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Population genomics reveals that refugial isolation and habitat change lead to incipient speciation in the Ground tit

(2019) Zhiyong Jiang et al.   ZOOLOGICA SCRIPTA

Molecular Phylogeographic Analyses and Species Delimitations Reveal Leopoldamys edwardsi (Rodentia: Muridae) is a Species Complex

(2019) Haotian LI et al.   Integrative Zoology

Cryptic phylogeographic history sheds light on the generation of species diversity in sky‐island mountains

(2019) Kai He et al.   JOURNAL OF BIOGEOGRAPHY

Hidden species diversity in Pachyhynobius: A multiple approaches species delimitation with mitogenomes

(2019) Tao Pan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeography, speciation and demographic history: Contrasting evidence from mitochondrial and nuclear markers of the Odorrana graminea sensu lato (Anura, Ranidae) in China

(2019) Zhuo Chen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

OUP accepted manuscript

(2018)   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Reticulate Pleistocene evolution of Ethiopian rodent genus along remarkable altitudinal gradient

(2018) Josef Bryja et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Evolutionary history of the genus Sorex (Soricidae, Eulipotyphla) as inferred from multigene data

(2018) Anna A. Bannikova et al.   ZOOLOGICA SCRIPTA

Climate niche conservatism and complex topography illuminate the cryptic diversification of Asian shrew-like moles

(2018) Tao Wan et al.   JOURNAL OF BIOGEOGRAPHY

From the Himalayas to a continental Island: Integrative species delimitation in the Brownish-flanked Bush Warbler Horornis fortipes complex

(2018) Chentao Wei et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Multilocus approaches reveal underestimated species diversity and inter-specific gene flow in pikas ( Ochotona ) from southwestern China

(2017) Narayan Prasad Koju et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Uplift-driven diversification in the Hengduan Mountains, a temperate biodiversity hotspot

(2017) Yaowu Xing et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficient Bayesian species tree inference under the multispecies coalescent

(2017) Bruce Rannala et al.   SYSTEMATIC BIOLOGY

Multi-locus phylogeny using topotype specimens sheds light on the systematics of Niviventer (Rodentia, Muridae) in China

(2016) Bin Zhang et al.   BMC EVOLUTIONARY BIOLOGY

Local endemism and within-island diversification of shrews illustrate the importance of speciation in building Sundaland mammal diversity

(2016) Terrence C. Demos et al.   MOLECULAR ECOLOGY

Incipient speciation with gene flow on a continental island: Species delimitation of the Hainan Hwamei (Leucodioptron canorum owstoni, Passeriformes, Aves)

(2016) Ning Wang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species diversification and phylogeographical patterns of birds in response to the uplift of the Qinghai-Tibet Plateau and Quaternary glaciations

(2016) Fumin Lei et al.   Current Zoology

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

(2015) Siavash Mirarab et al.   BIOINFORMATICS

The BPP program for species tree estimation and species delimitation

(2015) Ziheng Yang   Current Zoology

Molecular phylogenetics and phylogeographic structure of Sorex bedfordiae based on mitochondrial and nuclear DNA sequences

(2015) Shunde Chen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny, phylogeography and geographical variation in theCrocidura monax(Soricidae) species complex from the montane islands of Tanzania, with descriptions of three new species

(2015) William T. Stanley et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The BPP program for species tree estimation and species delimitation

(2015) Ziheng Yang   Current Zoology

Morphometric and pelage color variation of two sibling species of shrew (Mammalia: Soricomorpha)

(2014) Shunde Chen et al.   ACTA THERIOLOGICA

The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas

(2014) Adrien Favre et al.   BIOLOGICAL REVIEWS

Sky islands of southwest China. I: an overview of phylogeographic patterns

(2014) Kai He et al.   CHINESE SCIENCE BULLETIN

Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci

(2014) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Testing hypotheses of mitochondrial gene-tree paraphyly: unravelling mitochondrial capture of the Streak-breasted Scimitar Babbler (Pomatorhinus ruficollis) by the Taiwan Scimitar Babbler (Pomatorhinus musicus)

(2014) Feng Dong et al.   MOLECULAR ECOLOGY

Biodiversity and evolution of Imjin virus and Thottapalayam virus in Crocidurinae shrews in Zhejiang Province, China

(2014) Xian-Dan Lin et al.   VIRUS RESEARCH

Paraphyly and budding speciation in the hairy snail (Pulmonata, Hygromiidae)

(2014) Luise Kruckenhauser et al.   ZOOLOGICA SCRIPTA

Multilocus phylogeny and cryptic diversity in Asian shrew-like moles (Uropsilus, Talpidae): implications for taxonomy and conservation

(2013) Tao Wan et al.   BMC EVOLUTIONARY BIOLOGY

An empirical comparison of character-based and coalescent-based approaches to species delimitation in a young avian complex

(2013) Bailey D. McKay et al.   MOLECULAR ECOLOGY

Hidden diversity in the Andes: Comparison of species delimitation methods in montane marsupials

(2013) Thomas C. Giarla et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Forest refugia and riverine barriers promote diversification in the West African pygmy shrew (Crocidura obscuriorcomplex, Soricomorpha)

(2013) François Jacquet et al.   ZOOLOGICA SCRIPTA

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Food resources and foraging habits of the common shrew, Sorex araneus: does winter food shortage explain Dehnel's phenomenon?

(2012) Sara Churchfield et al.   OIKOS

Dispersal will limit ability of mammals to track climate change in the Western Hemisphere

(2012) C. A. Schloss et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mountains of Southern China as “Plant Museums” and “Plant Cradles”: Evolutionary and Conservation Insights

(2011) Jordi López-Pujol et al.   MOUNTAIN RESEARCH AND DEVELOPMENT

Additional data for nuclear DNA give new insights into the phylogenetic position of Sorex granarius within the Sorex araneus group

(2010) G. Yannic et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary

(2009) Johannes Krause et al.   BMC EVOLUTIONARY BIOLOGY

Sorex bedfordiae has the Smallest Diploid Chromosome Number of the XY Group in the Genus Sorex (Mammalia, Soricidae)

(2009) Junji Moribe et al.   CYTOLOGIA

Karyotypes of Six Soricomorph Species from Emei Shan, Sichuan Province, China

(2009) Masaharu Motokawa et al.   ZOOLOGICAL SCIENCE

Integrating paleoecology and genetics of bird populations in two sky island archipelagos

(2008) John E McCormack et al.   BMC BIOLOGY

Estimation of Hominoid Ancestral Population Sizes under Bayesian Coalescent Models Incorporating Mutation Rate Variation and Sequencing Errors

(2008) Ralph Burgess et al.   MOLECULAR BIOLOGY AND EVOLUTION

How many species are in the genus Batrachuperus? A phylogeographical analysis of the stream salamanders (family Hynobiidae) from southwestern China

(2008) JINZHONG FU et al.   MOLECULAR ECOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY