Genomic evidence for two phylogenetic species and long-term population bottlenecks in red pandas

Synteny search identifies Carnivore Y chromosome for evolution of male specific genes

(2018) Huizhong Fan et al.   Integrative Zoology

Predicting the potential distribution of the endangered red panda across its entire range using MaxEnt modeling

(2018) Arjun Thapa et al.   Ecology and Evolution

Inbreeding and inbreeding avoidance in wild giant pandas

(2017) Yibo Hu et al.   MOLECULAR ECOLOGY

Comparative genomics reveals convergent evolution between the bamboo-eating giant and red pandas

(2017) Yibo Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multi-omics enrichment analysis using the GeneTrail2 web service

(2016) Daniel Stöckel et al.   BIOINFORMATICS

Genome-Wide Search Identifies 1.9 Mb from the Polar Bear Y Chromosome for Evolutionary Analyses

(2015) Tobias Bidon et al.   Genome Biology and Evolution

SIFT missense predictions for genomes

(2015) Robert Vaser et al.   Nature Protocols

Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

(2015) Y. Xue et al.   SCIENCE

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A mitogenomic phylogeny and genetic history of sable (Martes zibellina)

(2014) Boris Malyarchuk et al.   GENE

The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease

(2014) Xinxia Peng et al.   NATURE BIOTECHNOLOGY

Genome-scale analysis of demographic history and adaptive selection

(2014) Qi Wu et al.   Protein & Cell

Outdated taxonomy blocks conservation

(2013) Eliécer E. Gutiérrez et al.   NATURE

Species splitting puts conservation at risk

(2013) Frank E. Zachos   NATURE

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Genetic structuring and recent demographic history of red pandas (Ailurus fulgens) inferred from microsatellite and mitochondrial DNA

(2011) YIBO HU et al.   MOLECULAR ECOLOGY

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

An ARMS-based technique for sex determination of red panda (Ailurus fulgens)

(2010) YUZHI LI et al.   Molecular Ecology Resources

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS