Increased Soil Bacterial Abundance but Decreased Bacterial Diversity and Shifted Bacterial Community Composition Following Secondary Succession of Old-Field

Divergent effects of drought and nitrogen deposition on microbial and arthropod soil communities in a Mediterranean forest

(2021) Guille Peguero et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Soil Bacterial Community Responds to Land-Use Change in Riparian Ecosystems

(2021) Vicky Waymouth et al.   Forests

Drought-induced and seasonal variation in carbon use efficiency is associated with fungi:bacteria ratio and enzyme production in a grassland ecosystem

(2021) Mohammad Rahmat Ullah et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil organic matter stability and microbial community in relation to different plant cover: A focus on forests characterizing Mediterranean area

(2021) Enrica Picariello et al.   APPLIED SOIL ECOLOGY

Soil biota shift with land use change from pristine rainforest and Savannah (Cerrado) to agriculture in southern Amazonia

(2021) Daniel R. Lammel et al.   MOLECULAR ECOLOGY

Effects of secondary succession on soil fungal and bacterial compositions and diversities in a karst area

(2021) Genzhu Wang et al.   PLANT AND SOIL

The relationships of present vegetation, bacteria, and soil properties with soil organic matter characteristics in moist acidic tundra in Alaska

(2021) Sungjin Nam et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Carbon sequestration and water yield tradeoffs following restoration of abandoned agricultural lands in Mediterranean mountains

(2021) M. Khorchani et al.   ENVIRONMENTAL RESEARCH

Soil bacteria and fungi respond differently to plant diversity and plant family composition during the secondary succession of abandoned farmland on the Loess Plateau, China

(2020) Zekun Zhong et al.   PLANT AND SOIL

Exotic Spartina alterniflora Loisel. Invasion significantly shifts soil bacterial communities with the successional gradient of saltmarsh in eastern China

(2020) Wen Yang et al.   PLANT AND SOIL

Change in composition and potential functional genes of soil bacterial and fungal communities with secondary succession in Quercus liaotungensis forests of the Loess Plateau, western China

(2020) Benshuai Yan et al.   GEODERMA

Soil pH exerts stronger impacts than vegetation type and plant diversity on soil bacterial community composition in subtropical broad-leaved forests

(2020) Jingmin Cheng et al.   PLANT AND SOIL

Successional trajectory of bacterial communities in soil are shaped by plant-driven changes during secondary succession

(2020) Mayank Krishna et al.   Scientific Reports

Effects of vegetation on bacterial communities, carbon and nitrogen in dryland soil surfaces: implications for shrub encroachment in the southwest Kalahari

(2020) Shubin Lan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Keystone Microbiomes Revealed by 14 Years of Field Restoration of the Degraded Agricultural Soil Under Distinct Vegetation Scenarios

(2020) Zhiming Zhang et al.   Frontiers in Microbiology

Response of soil microbial communities to natural and managed vegetation restoration in a subtropical karst region

(2020) Peilei Hu et al.   CATENA

Effects of land-use patterns on soil carbon and nitrogen variations along revegetated hillslopes in the Chinese Loess Plateau

(2020) Guangyao Gao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Vertical distributions of organic carbon fractions under paddy and forest soils derived from black shales: Implications for potential of long-term carbon storage

(2020) Zhilian Qin et al.   CATENA

Frequency of disturbance alters diversity, function, and underlying assembly mechanisms of complex bacterial communities

(2019) Ezequiel Santillan et al.   npj Biofilms and Microbiomes

Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

(2019) Paul B. L. George et al.   Nature Communications

Biogeochemical recuperation of lowland tropical forest during succession

(2019) Benjamin W. Sullivan et al.   ECOLOGY

Fast bacterial succession associated with the decomposition of Quercus wutaishanica litter on the Loess Plateau

(2019) Quanchao Zeng et al.   BIOGEOCHEMISTRY

Growing seasonal characteristics of soil and plants control the temporal patterns of bacterial communities following afforestation

(2019) Xinhui Han et al.   CATENA

Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests

(2019) Amélie Dukunde et al.   Frontiers in Microbiology

Effects of grassland afforestation on structure and function of soil bacterial and fungal communities

(2019) Kaibo Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Strong spatial and temporal turnover of soil bacterial communities in South Africa's hyperdiverse fynbos biome

(2019) Jan-Hendrik Keet et al.   SOIL BIOLOGY & BIOCHEMISTRY

Forest-to-agriculture conversion in Amazon drives soil microbial communities and N-cycle

(2019) Luis Fernando Merloti et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Differential soil microbial community responses to the linkage of soil organic carbon fractions with respiration across land-use changes

(2018) Chengjie Ren et al.   FOREST ECOLOGY AND MANAGEMENT

Bacterial communities in soil become sensitive to drought under intensive grazing

(2018) Stephanie D. Jurburg et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Decreased occurrence of carbon cycle functions in microbial communities along with long-term secondary succession

(2018) Yangquanwei Zhong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of the soil microbial community to nitrogen fertilizer regimes and historical exposure to extreme weather events: Flooding or prolonged-drought

(2018) Linh T.T. Nguyen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Controls of soil and aggregate-associated organic carbon variations following natural vegetation restoration on the Loess Plateau in China

(2018) Lei Deng et al.   LAND DEGRADATION & DEVELOPMENT

Effects of reforestation on plant species diversity on the Loess Plateau of China: A case study in Danangou catchment

(2018) Jing Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Plant litter mixture partly mitigates the negative effects of extended drought on soil biota and litter decomposition in a Mediterranean oak forest

(2017) Mathieu Santonja et al.   JOURNAL OF ECOLOGY

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Host preference and network properties in biotrophic plant-fungal associations

(2017) Sergei Põlme et al.   NEW PHYTOLOGIST

Fungal and bacterial contributions to nitrogen cycling in cheatgrass-invaded and uninvaded native sagebrush soils of the western USA

(2017) Nicole M. DeCrappeo et al.   PLANT AND SOIL

Striking alterations in the soil bacterial community structure and functioning of the biological N cycle induced by Pennisetum setaceum invasion in a semiarid environment

(2017) G. Rodríguez-Caballero et al.   SOIL BIOLOGY & BIOCHEMISTRY

Estimating decay dynamics for enzyme activities in soils from different ecosystems

(2017) Joshua Schimel et al.   SOIL BIOLOGY & BIOCHEMISTRY

Edaphic properties override the influence of crops on the composition of the soil bacterial community in a semiarid agroecosystem

(2016) Luke D. Bainard et al.   APPLIED SOIL ECOLOGY

Cover crops prevent the deleterious effect of nitrogen fertilisation on bacterial diversity by maintaining the carbon content of ploughed soil

(2016) Julien Verzeaux et al.   GEODERMA

Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors?

(2016) José A. Siles et al.   MICROBIAL ECOLOGY

Response of the soil microbial community composition and biomass to a short-term Spartina alterniflora invasion in a coastal wetland of eastern China

(2016) Wen Yang et al.   PLANT AND SOIL

Soil bacterial community dynamics reflect changes in plant community and soil properties during the secondary succession of abandoned farmland in the Loess Plateau

(2016) Chao Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland

(2016) Noriko A. Cassman et al.   Scientific Reports

A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes

(2016) Sevasti Filippidou et al.   Frontiers in Microbiology

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies

(2016) Davide Francioli et al.   Frontiers in Microbiology

Response of Soil Properties and Microbial Communities to Agriculture: Implications for Primary Productivity and Soil Health Indicators

(2016) Pankaj Trivedi et al.   Frontiers in Plant Science

Plant community richness and microbial interactions structure bacterial communities in soil

(2015) Daniel C. Schlatter et al.   ECOLOGY

Taxonomy, Physiology, and Natural Products of Actinobacteria

(2015) Essaid Ait Barka et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw

(2015) Ruibo Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Influence of 34-years of fertilization on bacterial communities in an intensively cultivated black soil in northeast China

(2015) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant nitrogen uptake drives rhizosphere bacterial community assembly during plant growth

(2015) Colin W. Bell et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant diversity increases soil microbial activity and soil carbon storage

(2015) Markus Lange et al.   Nature Communications

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Bacterial community structure and detection of putative plant growth-promoting rhizobacteria associated with plants grown in Chilean agro-ecosystems and undisturbed ecosystems

(2014) Milko A. Jorquera et al.   BIOLOGY AND FERTILITY OF SOILS

Interactions among soil, plants, and microorganisms drive secondary succession in a dry environment

(2014) Yudi M. Lozano et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil properties and tree species drive ß-diversity of soil bacterial communities

(2014) William J. Landesman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil bacterial community composition altered by increased nutrient availability in Arctic tundra soils

(2014) Akihiro Koyama et al.   Frontiers in Microbiology

Inside the root microbiome: Bacterial root endophytes and plant growth promotion

(2013) Jonathan R. Gaiero et al.   AMERICAN JOURNAL OF BOTANY

Impact of Logging and Forest Conversion to Oil Palm Plantations on Soil Bacterial Communities in Borneo

(2013) Larisa Lee-Cruz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Land-use conversion and changing soil carbon stocks in China's ‘Grain-for-Green’ Program: a synthesis

(2013) Lei Deng et al.   GLOBAL CHANGE BIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Plant monocultures produce more antagonistic soil Streptomyces communities than high-diversity plant communities

(2013) Matthew G. Bakker et al.   SOIL BIOLOGY & BIOCHEMISTRY

Assessing the soil erosion control service of ecosystems change in the Loess Plateau of China

(2011) Bojie Fu et al.   Ecological Complexity

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Regeneration of sandy old-fields in the forest steppe region of Hungary

(2011) A. Csecserits et al.   PLANT BIOSYSTEMS

Restoration of ecosystem services and biodiversity: conflicts and opportunities

(2011) James M. Bullock et al.   TRENDS IN ECOLOGY & EVOLUTION

Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria

(2010) Kathryn E. R. Davis et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial secondary succession in a chronosequence of chalk grasslands

(2010) Eiko E Kuramae et al.   ISME Journal

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Global Potential of Bioenergy on Abandoned Agriculture Lands

(2008) J. Elliott Campbell et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH