Impact of Logging and Forest Conversion to Oil Palm Plantations on Soil Bacterial Communities in Borneo

Navjot's nightmare revisited: logging, agriculture, and biodiversity in Southeast Asia

(2013) David S. Wilcove et al.   TRENDS IN ECOLOGY & EVOLUTION

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

(2012) David A W Soergel et al.   ISME Journal

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

(2012) Binu M. Tripathi et al.   MICROBIAL ECOLOGY

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

(2012) Chengwei Luo et al.   PLoS One

Distinct Soil Bacterial Communities Revealed under a Diversely Managed Agroecosystem

(2012) Raymon S. Shange et al.   PLoS One

Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities

(2012) J. L. M. Rodrigues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads

(2011) Andrea K. Bartram et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil characteristics more strongly influence soil bacterial communities than land-use type

(2011) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

The high costs of conserving Southeast Asia's lowland rainforests

(2011) Brendan Fisher et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Primary forests are irreplaceable for sustaining tropical biodiversity

(2011) Luke Gibson et al.   NATURE

The conservation value of South East Asia's highly degraded forests: evidence from leaf-litter ants

(2011) P. Woodcock et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cost-effective conservation: calculating biodiversity and logging trade-offs in Southeast Asia

(2011) Brendan Fisher et al.   Conservation Letters

Phylogenetic and Multivariate Analyses To Determine the Effects of Different Tillage and Residue Management Practices on Soil Bacterial Communities

(2010) J. A. Ceja-Navarro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist

(2010) Marti J. Anderson et al.   ECOLOGY LETTERS

BIPES, a cost-effective high-throughput method for assessing microbial diversity

(2010) Hong-Wei Zhou et al.   ISME Journal

Land Use Intensity Controls Actinobacterial Community Structure

(2010) Patrick Hill et al.   MICROBIAL ECOLOGY

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tropical forests were the primary sources of new agricultural land in the 1980s and 1990s

(2010) H. K. Gibbs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Degraded lands worth protecting: the biological importance of Southeast Asia's repeatedly logged forests

(2010) D. P. Edwards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Members of soil bacterial communities sensitive to tillage and crop rotation

(2010) Chuntao Yin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest

(2010) Diana R. Nemergut et al.   SOIL BIOLOGY & BIOCHEMISTRY

Wildlife-friendly oil palm plantations fail to protect biodiversity effectively

(2010) David P. Edwards et al.   Conservation Letters

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

(2008) V. Acosta-Martínez et al.   SOIL BIOLOGY & BIOCHEMISTRY

How will oil palm expansion affect biodiversity?

(2008) E FITZHERBERT et al.   TRENDS IN ECOLOGY & EVOLUTION

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics