Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice

24‐nt phasiRNAs move from tapetal to meiotic cells in maize anthers

(2022) Xue Zhou et al.   NEW PHYTOLOGIST

PRD1, a homologous recombination initiation factor, is involved in spindle assembly in rice meiosis

(2021) Wenqing Shi et al.   NEW PHYTOLOGIST

Short and Long Term Challenges in Crop Breeding

(2021) Hong Yu et al.   National Science Review

sRNAanno—a database repository of uniformly annotated small RNAs in plants

(2021) Chengjie Chen et al.   Horticulture Research

Nurse cell­–derived small RNAs define paternal epigenetic inheritance in Arabidopsis

(2021) Jincheng Long et al.   SCIENCE

Small RNA flow from tapetum cells to germ cells in plants

(2021) Chao Yang et al.   Science China-Life Sciences

Pre-meiotic 21-nucleotide reproductive phasiRNAs emerged in seed plants and diversified in flowering plants

(2021) Suresh Pokhrel et al.   Nature Communications

The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types

(2021) Tingting Chen et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Comparative transcriptome and DNA methylation analysis in temperature-sensitive genic male sterile wheat BS366

(2021) Yong-jie Liu et al.   BMC GENOMICS

Plant and animal small RNA communications between cells and organisms

(2021) Xuemei Chen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Mechanism for the genomic and functional evolution of the MIR2118 family in the grass lineage

(2021) Ting Lan et al.   NEW PHYTOLOGIST

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022

(2021) et al.   NUCLEIC ACIDS RESEARCH

Origin, evolution and diversification of plant ARGONAUTE proteins

(2021) Zancong Li et al.   PLANT JOURNAL

Rice functional genomics: decades’ efforts and roads ahead

(2021) Rongzhi Chen et al.   Science China-Life Sciences

Plant abiotic stress response and nutrient use efficiency

(2020) Zhizhong Gong et al.   Science China-Life Sciences

Oryza sativa RNA-dependent RNA Polymerase 6 Contributes to Double-strand Break Formation in Meiosis

(2020) Changzhen Liu et al.   PLANT CELL

Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize

(2020) Chong Teng et al.   Nature Communications

miR2118-dependent U-rich phasiRNA production in rice anther wall development

(2020) Saori Araki et al.   Nature Communications

PhasiRNAs in Plants: Their Biogenesis, Genic Sources, and Roles in Stress Responses, Development, and Reproduction

(2020) Yuanlong Liu et al.   PLANT CELL

21-nt phasiRNAs direct target mRNA cleavage in rice male germ cells

(2020) Pengfei Jiang et al.   Nature Communications

CHH DNA methylation increases at 24‐ PHAS loci depend on 24‐nt phased small interfering RNAs in maize meiotic anthers

(2020) Mei Zhang et al.   NEW PHYTOLOGIST

Reproductive phasiRNAs regulate reprogramming of gene expression and meiotic progression in rice

(2020) Yu-Chan Zhang et al.   Nature Communications

OsDCL3b affects grain yield and quality in rice

(2019) Peng-Fei Liao et al.   PLANT MOLECULAR BIOLOGY

The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor

(2019) Shuzhi Zheng et al.   Nature Communications

MicroRNAs and Their Regulatory Roles in Plant–Environment Interactions

(2019) Xianwei Song et al.   Annual Review of Plant Biology

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Transcriptome Profiling of Wheat Inflorescence Development from Spikelet Initiation to Floral Patterning Identified Stage-Specific Regulatory Genes

(2017) Nan Feng et al.   PLANT PHYSIOLOGY

RNAi in Plants: An Argonaute-Centered View

(2016) Xiaofeng Fang et al.   PLANT CELL

Breeding approaches and genomics technologies to increase crop yield under low-temperature stress

(2016) Uday Chand Jha et al.   PLANT CELL REPORTS

PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

(2016) Yourong Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution, functions, and mysteries of plant ARGONAUTE proteins

(2015) Han Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability

(2015) Michael V. Mickelbart et al.   NATURE REVIEWS GENETICS

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

(2015) Jixian Zhai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intercellular Protein Movement: Deciphering the Language of Development

(2014) Kimberly L. Gallagher et al.   Annual Review of Cell and Developmental Biology

The Stem Cell Niche in Leaf Axils Is Established by Auxin and Cytokinin in Arabidopsis

(2014) Y. Wang et al.   PLANT CELL

Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs

(2014) Reina Komiya et al.   PLANT JOURNAL

RNase ZS1 processes Ub L40 mRNAs and controls thermosensitive genic male sterility in rice

(2014) Hai Zhou et al.   Nature Communications

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development

(2012) Xianwei Song et al.   PLANT JOURNAL

Mobile protein signals in plant development

(2011) Shuang Wu et al.   CURRENT OPINION IN PLANT BIOLOGY

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

(2009) C. Johnson et al.   GENOME RESEARCH

Rice MicroRNA Effector Complexes and Targets

(2009) L. Wu et al.   PLANT CELL

Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

(2008) Meenu Kapoor et al.   BMC GENOMICS

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL