Evolution of increased complexity and specificity at the dawn of form I Rubiscos

The evolution of oxygen-utilizing enzymes suggests early biosphere oxygenation

(2021) Jagoda Jabłońska et al.   Nature Ecology & Evolution

Rubisco adaptation is more limited by phylogenetic constraint than by catalytic trade-off

(2021) Jacques W Bouvier et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quantifying the heterogeneity of macromolecular machines by mass photometry

(2020) Adar Sonn-Segev et al.   Nature Communications

Modifying Plant Photosynthesis and Growth via Simultaneous Chloroplast Transformation of Rubisco Large and Small Subunits

(2020) Elena Martin-Avila et al.   PLANT CELL

A hydrophobic ratchet entrenches molecular complexes

(2020) Georg K. A. Hochberg et al.   NATURE

The global mass and average rate of rubisco

(2019) Yinon M. Bar-On et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revisiting Trade-offs between Rubisco Kinetic Parameters

(2019) Avi I. Flamholz et al.   BIOCHEMISTRY

TOPAZ: A Positive-Unlabeled Convolutional Neural Network CryoEM Particle Picker that can Pick Any Size and Shape Particle

(2019) Tristan Bepler et al.   MICROSCOPY AND MICROANALYSIS

Evolutionary trends in RuBisCO kinetics and their co‐evolution with CO 2 concentrating mechanisms

(2019) Concepción Iñiguez et al.   PLANT JOURNAL

A short history of RubisCO: the rise and fall (?) of Nature's predominant CO 2 fixing enzyme

(2018) Tobias J Erb et al.   CURRENT OPINION IN BIOTECHNOLOGY

cisTEM, user-friendly software for single-particle image processing

(2018) Timothy Grant et al.   eLife

Constraining the timing of the Great Oxidation Event within the Rubisco phylogenetic tree

(2017) B. Kacar et al.   Geobiology

An improvedEscherichia coliscreen for Rubisco identifies a protein–protein interface that can enhance CO2-fixation kinetics

(2017) Robert H. Wilson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Proteins evolve on the edge of supramolecular self-assembly

(2017) Hector Garcia-Seisdedos et al.   NATURE

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

(2017) Ali Punjani et al.   NATURE METHODS

The Photorespiratory Metabolite 2-Phosphoglycolate Regulates Photosynthesis and Starch Accumulation in Arabidopsis

(2017) Franziska Flügel et al.   PLANT CELL

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

(2017) Thomas D. Goddard et al.   PROTEIN SCIENCE

Crown group Oxyphotobacteria postdate the rise of oxygen

(2016) P. M. Shih et al.   Geobiology

Robustness of Reconstructed Ancestral Protein Functions to Statistical Uncertainty

(2016) Geeta N. Eick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biochemical characterization of predicted Precambrian RuBisCO

(2016) Patrick M. Shih et al.   Nature Communications

A redox-stratified ocean 3.2 billion years ago

(2015) Aaron M. Satkoski et al.   EARTH AND PLANETARY SCIENCE LETTERS

Origin and Evolution of Water Oxidation before the Last Common Ancestor of the Cyanobacteria

(2015) Tanai Cardona et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils

(2015) Bettina E. Schirrmeister et al.   PALAEONTOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Role of Small Subunit in Mediating Assembly of Red-type Form I Rubisco

(2014) Jidnyasa Joshi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CO2 and O2 Distribution in Rubisco Suggests the Small Subunit Functions as a CO2 Reservoir

(2014) Michiel van Lun et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Evidence for oxygenic photosynthesis half a billion years before the Great Oxidation Event

(2014) Noah J. Planavsky et al.   Nature Geoscience

Evolution of multicellularity coincided with increased diversification of cyanobacteria and the Great Oxidation Event

(2013) B. E. Schirrmeister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Coupled chaperone action in folding and assembly of hexadecameric Rubisco

(2010) Cuimin Liu et al.   NATURE

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Photorespiration: players, partners and origin

(2010) Hermann Bauwe et al.   TRENDS IN PLANT SCIENCE

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Evolving improvedSynechococcusRubisco functional expression inEscherichia coli

(2008) Oliver Mueller-Cajar et al.   BIOCHEMICAL JOURNAL

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of inorganic carbon concentrating mechanisms in photosynthesis

(2008) J. A Raven et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Structure and function of Rubisco

(2008) Inger Andersson et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY