UCSF ChimeraX: Meeting modern challenges in visualization and analysis

CATH: an expanded resource to predict protein function through structure and sequence

(2016) Natalie L. Dawson et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

On the interpretation of electron microscopic maps of biological macromolecules

(2016) Jimin Wang et al.   PROTEIN SCIENCE

Database resources of the National Center for Biotechnology Information

(2015)   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

(2015) Andrej Sali et al.   STRUCTURE

Multi-scale Visualization of Molecular Architecture Using Real-Time Ambient Occlusion in Sculptor

(2015) Manuel Wahle et al.   PLoS Computational Biology

Structural Characterization by Cross-linking Reveals the Detailed Architecture of a Coatomer-related Heptameric Module from the Nuclear Pore Complex

(2014) Yi Shi et al.   MOLECULAR & CELLULAR PROTEOMICS

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution

(2014) Bi-Chang Chen et al.   SCIENCE

Cytoscape App Store

(2013) S. Lotia et al.   BIOINFORMATICS

Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling

(2013) M. L. Baker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

OpenMM: A Hardware-Independent Framework for Molecular Simulations

(2010) Peter Eastman et al.   COMPUTING IN SCIENCE & ENGINEERING

Visualization of macromolecular structures

(2010) Seán I O'Donoghue et al.   NATURE METHODS

Cryo-EM of macromolecular assemblies at near-atomic resolution

(2010) Matthew L Baker et al.   Nature Protocols

ModBase, a database of annotated comparative protein structure models, and associated resources

(2010) U. Pieper et al.   NUCLEIC ACIDS RESEARCH

BioCatalogue: a universal catalogue of web services for the life sciences

(2010) J. Bhagat et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: redesigned web site and web services

(2010) P. W. Rose et al.   NUCLEIC ACIDS RESEARCH

Web services at the European Bioinformatics Institute-2009

(2009) H. Mcwilliam et al.   NUCLEIC ACIDS RESEARCH