标题
SPASCER: spatial transcriptomics annotation at single-cell resolution
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2022-10-16
DOI
10.1093/nar/gkac889
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Spatial transcriptomics and the kidney
- (2022) Ricardo Melo Ferreira et al. CURRENT OPINION IN NEPHROLOGY AND HYPERTENSION
- Cell2location maps fine-grained cell types in spatial transcriptomics
- (2022) Vitalii Kleshchevnikov et al. NATURE BIOTECHNOLOGY
- The spatial transcriptomic landscape of the healing mouse intestine following damage
- (2022) Sara M. Parigi et al. Nature Communications
- T-cell dysfunction in the glioblastoma microenvironment is mediated by myeloid cells releasing interleukin-10
- (2022) Vidhya M. Ravi et al. Nature Communications
- Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays
- (2022) Ao Chen et al. CELL
- Human distal lung maps and lineage hierarchies reveal a bipotent progenitor
- (2022) Preetish Kadur Lakshminarasimha Murthy et al. NATURE
- Alignment and integration of spatial transcriptomics data
- (2022) Ron Zeira et al. NATURE METHODS
- Spatial transcriptome data from coronal mouse brain sections after striatal injection of heme and heme-hemopexin
- (2022) Kevin Akeret et al. Data in Brief
- Spatiotemporal analysis of human intestinal development at single-cell resolution
- (2021) David Fawkner-Corbett et al. CELL
- LAMC2 promotes cancer progression and gemcitabine resistance through modulation of EMT and ATP-binding cassette transporters in pancreatic ductal adenocarcinoma
- (2021) Yasuyuki Okada et al. CARCINOGENESIS
- Spatial profiling technologies and applications for brain cancers
- (2021) Priyakshi Kalita-de Croft et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
- Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
- (2021) Kristen R. Maynard et al. NATURE NEUROSCIENCE
- Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis
- (2021) Madhav Mantri et al. Nature Communications
- An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer
- (2021) Sia Viborg Lindskrog et al. Nature Communications
- ITGA2, LAMB3, and LAMC2 may be the potential therapeutic targets in pancreatic ductal adenocarcinoma: an integrated bioinformatics analysis
- (2021) Shajedul Islam et al. Scientific Reports
- Integration of spatial and single cell transcriptomics localizes epithelial-immune cross-talk in kidney injury
- (2021) Ricardo Melo Ferreira et al. JCI Insight
- Integrated analysis of multimodal single-cell data
- (2021) Yuhan Hao et al. CELL
- Molecular architecture of the developing mouse brain
- (2021) Gioele La Manno et al. NATURE
- Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis
- (2021) T. Lohoff et al. NATURE BIOTECHNOLOGY
- A single-cell and spatially resolved atlas of human breast cancers
- (2021) Sunny Z. Wu et al. NATURE GENETICS
- Spatial and cell type transcriptional landscape of human cerebellar development
- (2021) Kimberly A. Aldinger et al. NATURE NEUROSCIENCE
- Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics
- (2021) Sophia K. Longo et al. NATURE REVIEWS GENETICS
- Embryo-scale, single-cell spatial transcriptomics
- (2021) Sanjay R. Srivatsan et al. SCIENCE
- An N-Cadherin 2 expressing epithelial cell subpopulation predicts response to surgery, chemotherapy and immunotherapy in bladder cancer
- (2021) Kenneth H. Gouin et al. Nature Communications
- Spatiotemporal Immune Landscape of Colorectal Cancer Liver Metastasis at Single-Cell Level
- (2021) Yingcheng Wu et al. Cancer Discovery
- Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain
- (2021) Shaina Lu et al. PLOS BIOLOGY
- Integrating Spatial Transcriptomics and Single-Cell RNA-seq Reveals the Gene Expression Profling of the Human Embryonic Liver
- (2021) Xianliang Hou et al. Frontiers in Cell and Developmental Biology
- Spatially Resolved Transcriptomic Analysis of Acute Kidney Injury in a Female Murine Model
- (2021) Eryn E. Dixon et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- An atlas of gene regulatory elements in adult mouse cerebrum
- (2021) Yang Eric Li et al. NATURE
- Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
- (2021) Luz Garcia-Alonso et al. NATURE GENETICS
- Spatial transcriptomics reveals gene expression characteristics in invasive micropapillary carcinoma of the breast
- (2021) Jianke Lv et al. Cell Death & Disease
- Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver
- (2021) Franziska Hildebrandt et al. Nature Communications
- Spatially resolved transcriptomics reveals the architecture of the tumor-microenvironment interface
- (2021) Miranda V. Hunter et al. Nature Communications
- Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions
- (2021) Alma Andersson et al. Nature Communications
- Dissecting mammalian spermatogenesis using spatial transcriptomics
- (2021) Haiqi Chen et al. Cell Reports
- Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer
- (2021) Eduard Chelebian et al. Cancers
- Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids
- (2020) Susanne C. van den Brink et al. NATURE
- Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas
- (2020) Reuben Moncada et al. NATURE BIOTECHNOLOGY
- Statistical analysis of spatial expression patterns for spatially resolved transcriptomic studies
- (2020) Shiquan Sun et al. NATURE METHODS
- CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes
- (2020) Mirjana Efremova et al. Nature Protocols
- Primary tumors release ITGBL1-rich extracellular vesicles to promote distal metastatic tumor growth through fibroblast-niche formation
- (2020) Qing Ji et al. Nature Communications
- Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments
- (2020) Christopher A Jackson et al. eLife
- Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma
- (2020) Andrew L. Ji et al. CELL
- Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease
- (2020) Wei-Ting Chen et al. CELL
- Single-cell genomics and spatial transcriptomics: discovery of novel cell states and cellular interactions in liver physiology and disease biology
- (2020) Antonio Saviano et al. JOURNAL OF HEPATOLOGY
- Role of MIF Cytokine/CD74 Receptor Pathway in Protecting Against Injury and Promoting Repair
- (2020) Laura Farr et al. Frontiers in Immunology
- CCL8 Promotes Postpartum Breast Cancer by Recruiting M2 Macrophages
- (2020) Elena Farmaki et al. iScience
- Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development
- (2020) Edie I. Crosse et al. Cell Stem Cell
- Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue
- (2020) Daniel Gyllborg et al. NUCLEIC ACIDS RESEARCH
- Spatial Transcriptomics Reveals Genes Associated with Dysregulated Mitochondrial Functions and Stress Signaling in Alzheimer Disease
- (2020) José Fernández Navarro et al. iScience
- High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue
- (2020) Yang Liu et al. CELL
- Spatial profiling of gastric cancer patient-matched primary and locoregional metastases reveals principles of tumour dissemination
- (2020) Raghav Sundar et al. GUT
- Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2
- (2020) Robert R. Stickels et al. NATURE BIOTECHNOLOGY
- MIF-Dependent Control of Tumor Immunity
- (2020) Jordan T. Noe et al. Frontiers in Immunology
- Spatial heterogeneity in the mammalian liver
- (2019) Shani Ben-Moshe et al. Nature Reviews Gastroenterology & Hepatology
- High-definition spatial transcriptomics for in situ tissue profiling
- (2019) Sanja Vickovic et al. NATURE METHODS
- HER2-targeted therapies — a role beyond breast cancer
- (2019) Do-Youn Oh et al. Nature Reviews Clinical Oncology
- Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression
- (2019) Chenglong Xia et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- TGF-β Signaling Promotes Tissue Formation during Cardiac Valve Regeneration in Adult Zebrafish
- (2019) Anabela Bensimon-Brito et al. DEVELOPMENTAL CELL
- CCL8 secreted by tumor-associated macrophages promotes invasion and stemness of glioblastoma cells via ERK1/2 signaling
- (2019) Xiang Zhang et al. LABORATORY INVESTIGATION
- Fast, sensitive and accurate integration of single-cell data with Harmony
- (2019) Ilya Korsunsky et al. NATURE METHODS
- A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart
- (2019) Michaela Asp et al. CELL
- Identification of spatial expression trends in single-cell gene expression data
- (2018) Daniel Edsgärd et al. NATURE METHODS
- SpatialDE: identification of spatially variable genes
- (2018) Valentine Svensson et al. NATURE METHODS
- Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
- (2018) Emelie Berglund et al. Nature Communications
- ITGB1-dependent upregulation of Caveolin-1 switches TGFβ signalling from tumour-suppressive to oncogenic in prostate cancer
- (2018) Teijo Pellinen et al. Scientific Reports
- CD74 regulates complexity of tumor cell HLA class II peptidome in brain metastasis and is a positive prognostic marker for patient survival
- (2018) P. S. Zeiner et al. Acta Neuropathologica Communications
- Spatially resolved transcriptomics enables dissection of genetic heterogeneity in stage III cutaneous malignant melanoma
- (2018) Kim Thrane et al. CANCER RESEARCH
- Spatial Reconstruction of Single Enterocytes Uncovers Broad Zonation along the Intestinal Villus Axis
- (2018) Andreas E. Moor et al. CELL
- OUP accepted manuscript
- (2018) NUCLEIC ACIDS RESEARCH
- Spatial organization of the somatosensory cortex revealed by osmFISH
- (2018) Simone Codeluppi et al. NATURE METHODS
- Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing
- (2018) Michael Bartoschek et al. Nature Communications
- SCENIC: single-cell regulatory network inference and clustering
- (2017) Sara Aibar et al. NATURE METHODS
- DrugBank 5.0: a major update to the DrugBank database for 2018
- (2017) David S Wishart et al. NUCLEIC ACIDS RESEARCH
- Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
- (2016) P. L. Stahl et al. SCIENCE
- CD74 interacts with CD44 and enhances tumorigenesis and metastasis via RHOA-mediated cofilin phosphorylation in human breast cancer cells
- (2016) Zhiyong Liu et al. Oncotarget
- LAMC2 enhances the metastatic potential of lung adenocarcinoma
- (2015) Y W Moon et al. CELL DEATH AND DIFFERENTIATION
- Spatially resolved, highly multiplexed RNA profiling in single cells
- (2015) K. H. Chen et al. SCIENCE
- LAMC2 as a therapeutic target for cancers
- (2014) Manoj Garg et al. EXPERT OPINION ON THERAPEUTIC TARGETS
- Single-cell in situ RNA profiling by sequential hybridization
- (2014) Eric Lubeck et al. NATURE METHODS
- A Monoclonal Antibody against Human Notch1 Ligand-Binding Domain Depletes Subpopulation of Putative Breast Cancer Stem-like Cells
- (2011) A. Sharma et al. MOLECULAR CANCER THERAPEUTICS
- CCL8 and skin T cells—an allergic attraction
- (2011) Gudrun F Debes et al. NATURE IMMUNOLOGY
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