Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain

Spatially resolved transcriptomics in neuroscience

(2021) Jennie L. Close et al.   NATURE METHODS

Method of the Year: spatially resolved transcriptomics

(2021) Vivien Marx   NATURE METHODS

Connect-seq to superimpose molecular on anatomical neural circuit maps

(2020) Naresh K. Hanchate et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

(2020) Quanxin Wang et al.   CELL

BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals

(2020) Longwen Huang et al.   CELL

Molecular atlas of the adult mouse brain

(2020) Cantin Ortiz et al.   Science Advances

Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution

(2019) Samuel G. Rodriques et al.   SCIENCE

High-definition spatial transcriptomics for in situ tissue profiling

(2019) Sanja Vickovic et al.   NATURE METHODS

High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing

(2019) Xiaoyin Chen et al.   CELL

Enhanced and unified anatomical labeling for a common mouse brain atlas

(2019) Uree Chon et al.   Nature Communications

Distinct descending motor cortex pathways and their roles in movement

(2018) Michael N. Economo et al.   NATURE

Spatial organization of the somatosensory cortex revealed by osmFISH

(2018) Simone Codeluppi et al.   NATURE METHODS

Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region

(2018) Jeffrey R. Moffitt et al.   SCIENCE

Discrepancies in stereotaxic coordinate publications and improving precision using an animal-specific atlas

(2017) Nima Azimi et al.   JOURNAL OF NEUROSCIENCE METHODS

The genetic basis of parental care evolution in monogamous mice

(2017) Andres Bendesky et al.   NATURE

An interactive framework for whole-brain maps at cellular resolution

(2017) Daniel Fürth et al.   NATURE NEUROSCIENCE

The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing

(2017) Ed Lein et al.   SCIENCE

Meta-analysis in basic biology

(2016)   NATURE METHODS

The mouse cortico-striatal projectome

(2016) Houri Hintiryan et al.   NATURE NEUROSCIENCE

Disentangling neural cell diversity using single-cell transcriptomics

(2016) Jean-Francois Poulin et al.   NATURE NEUROSCIENCE

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

(2016) P. L. Stahl et al.   SCIENCE

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

(2015) Cathryn R Cadwell et al.   NATURE BIOTECHNOLOGY

The hippocampal CA2 region is essential for social memory

(2014) Frederick L. Hitti et al.   NATURE

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

(2014)   NATURE BIOTECHNOLOGY

Toward a Genetic Dissection of Cortical Circuits in the Mouse

(2014) Z. Josh Huang   NEURON

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

AMIGO2 mRNA expression in hippocampal CA2 and CA3a

(2012) Annelies Laeremans et al.   Brain Structure & Function