标题
Genome sequencing reveals evidence of adaptive variation in the genus Zea
作者
关键词
-
出版物
NATURE GENETICS
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2022-10-21
DOI
10.1038/s41588-022-01184-y
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Demonstration of local adaptation in maize landraces by reciprocal transplantation
- (2022) Garrett M. Janzen et al. Evolutionary Applications
- An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time
- (2022) Allison C. Barnes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A cis-regulatory atlas in maize at single-cell resolution
- (2021) Alexandre P. Marand et al. CELL
- Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
- (2021) Zifeng Guo et al. JOURNAL OF APPLIED GENETICS
- Molecular Parallelism Underlies Convergent Highland Adaptation of Maize Landraces
- (2021) Li Wang et al. MOLECULAR BIOLOGY AND EVOLUTION
- A teosinte-derived allele of a MYB transcription repressor confers multiple disease resistance in maize
- (2021) Hongze Wang et al. Molecular Plant
- De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
- (2021) Matthew B. Hufford et al. SCIENCE
- Selective sorting of ancestral introgression in maize and teosinte along an elevational cline
- (2021) Erin Calfee et al. PLoS Genetics
- Gluconacetobacter diazotrophicus Changes The Molecular Mechanisms of Root Development in Oryza sativa L. Growing Under Water Stress
- (2020) Renata Silva et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Targeting Key Genes to Tailor Old and New Crops for a Greener Agriculture
- (2020) Alisdair R. Fernie et al. Molecular Plant
- High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize
- (2020) Haijun Liu et al. PLANT CELL
- Divergence-Based Introgression Polarization
- (2020) Evan S Forsythe et al. Genome Biology and Evolution
- GDSL lipase occluded stomatal pore 1 is required for wax biosynthesis and stomatal cuticular ledge formation
- (2020) Jing Tang et al. NEW PHYTOLOGIST
- ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era
- (2020) Songtao Gui et al. iScience
- The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice
- (2020) Liwen Liang et al. PLANT CELL AND ENVIRONMENT
- Gene regulatory effects of a large chromosomal inversion in highland maize
- (2020) Taylor Crow et al. PLoS Genetics
- When Will Current Climate Extremes Affecting Maize Production Become the Norm?
- (2019) M. Zampieri et al. Earths Future
- The Genetics and Genome-Wide Screening of Regrowth Loci, a Key Component of Perennialism in Zea diploperennis
- (2019) Anjun Ma et al. G3-Genes Genomes Genetics
- Evolving Inversions
- (2019) Rui Faria et al. TRENDS IN ECOLOGY & EVOLUTION
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments
- (2019) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Parallels between natural selection in the cold‐adapted crop‐wild relative Tripsacum dactyloides and artificial selection in temperate adapted maize
- (2019) Lang Yan et al. PLANT JOURNAL
- CIRCADIAN CLOCK ASSOCIATED 1 and ATAF2 differentially suppress cytochrome P450-mediated brassinosteroid inactivation
- (2019) Hao Peng et al. JOURNAL OF EXPERIMENTAL BOTANY
- Genetic strategies for improving crop yields
- (2019) Julia Bailey-Serres et al. NATURE
- Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude
- (2019) Margaux-Alison Fustier et al. PLoS Genetics
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- Ecogeography of teosinte
- (2018) José de Jesús Sánchez González et al. PLoS One
- Future warming increases probability of globally synchronized maize production shocks
- (2018) Michelle Tigchelaar et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Wild Relatives of Maize, Rice, Cotton, and Soybean: Treasure Troves for Tolerance to Biotic and Abiotic Stresses
- (2018) Jafar Mammadov et al. Frontiers in Plant Science
- Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent
- (2018) Tomáš Flouri et al. MOLECULAR BIOLOGY AND EVOLUTION
- Dissecting the genetic architecture of waterlogging stress-related traits uncovers a key waterlogging tolerance gene in maize
- (2018) Feng Yu et al. THEORETICAL AND APPLIED GENETICS
- De novo Transcriptome Assemblies Reveal Parallel Gene Evolution with Maize after Ancient Polyploidy
- (2018) Christine M. Gault et al. Plant Genome
- Local PCA Shows How the Effect of Population Structure Differs Along the Genome
- (2018) Han Li et al. GENETICS
- The extent of adaptive wild introgression in crops
- (2018) Garrett M. Janzen et al. NEW PHYTOLOGIST
- The Gene Ontology Resource: 20 years and still GOing strong
- (2018) NUCLEIC ACIDS RESEARCH
- Connecting genomic patterns of local adaptation and niche suitability in teosintes
- (2017) J. A. Aguirre-Liguori et al. MOLECULAR ECOLOGY
- Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples
- (2017) M.-A. Fustier et al. MOLECULAR ECOLOGY
- Improved maize reference genome with single-molecule technologies
- (2017) Yinping Jiao et al. NATURE
- Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America
- (2017) Kelly Swarts et al. SCIENCE
- Contributions of Zea mays subspecies mexicana haplotypes to modern maize
- (2017) Ning Yang et al. Nature Communications
- Genetic Analysis of Teosinte Alleles for Kernel Composition Traits in Maize
- (2017) Avinash Karn et al. G3-Genes Genomes Genetics
- Influence of extreme weather disasters on global crop production
- (2016) Corey Lesk et al. NATURE
- Identification of genetic variants associated with maize flowering time using an extremely large multi-genetic background population
- (2016) Yong-xiang Li et al. PLANT JOURNAL
- Expanding Maize Genetic Resources with Predomestication Alleles: Maize–Teosinte Introgression Populations
- (2016) Zhengbin Liu et al. Plant Genome
- Genome Alignment Spanning Major Poaceae Lineages Reveals Heterogeneous Evolutionary Rates and Alters Inferred Dates for Key Evolutionary Events
- (2015) Xiyin Wang et al. Molecular Plant
- Genome-wide recombination dynamics are associated with phenotypic variation in maize
- (2015) Qingchun Pan et al. NEW PHYTOLOGIST
- Following the footprints of polymorphic inversions on SNP data: from detection to association tests
- (2015) Alejandro Cáceres et al. NUCLEIC ACIDS RESEARCH
- FLOR-ID: an interactive database of flowering-time gene networks inArabidopsis thaliana
- (2015) Frédéric Bouché et al. NUCLEIC ACIDS RESEARCH
- Second-generation PLINK: rising to the challenge of larger and richer datasets
- (2015) Christopher C Chang et al. GigaScience
- clValid: AnRPackage for Cluster Validation
- (2015) Guy Brock et al. Journal of Statistical Software
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- ANGSD: Analysis of Next Generation Sequencing Data
- (2014) Thorfinn Sand Korneliussen et al. BMC BIOINFORMATICS
- SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
- (2014) Tae-Ho Lee et al. BMC GENOMICS
- Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa
- (2014) Chuang Wang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Insect and pathogen attack and resistance in maize and its wild ancestors, the teosintes
- (2014) Elvira S. de Lange et al. NEW PHYTOLOGIST
- A meta-analysis of crop yield under climate change and adaptation
- (2014) A. J. Challinor et al. Nature Climate Change
- A global soil data set for earth system modeling
- (2014) Wei Shangguan et al. Journal of Advances in Modeling Earth Systems
- Flooding tolerance in interspecific introgression lines containing chromosome segments from teosinte (Zea nicaraguensis) in maize (Zea mays subsp. mays)
- (2013) Y. Mano et al. ANNALS OF BOTANY
- CrossMap: a versatile tool for coordinate conversion between genome assemblies
- (2013) Hao Zhao et al. BIOINFORMATICS
- Meiotic Adaptation to Genome Duplication in Arabidopsis arenosa
- (2013) Levi Yant et al. CURRENT BIOLOGY
- Complex Patterns of Local Adaptation in Teosinte
- (2013) Tanja Pyhäjärvi et al. Genome Biology and Evolution
- Yield Trends Are Insufficient to Double Global Crop Production by 2050
- (2013) Deepak K. Ray et al. PLoS One
- Dynamic QTL Analysis and Candidate Gene Mapping for Waterlogging Tolerance at Maize Seedling Stage
- (2013) Khalid A. Osman et al. PLoS One
- The Genomic Signature of Crop-Wild Introgression in Maize
- (2013) Matthew B. Hufford et al. PLoS Genetics
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize
- (2012) Zhou Fang et al. GENETICS
- Maize HapMap2 identifies extant variation from a genome in flux
- (2012) Jer-Ming Chia et al. NATURE GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Dynamic evolution ofbzorthologous regions in theAndropogoneaeand other grasses
- (2012) Qinghua Wang et al. PLANT JOURNAL
- Inferences from the Historical Distribution of Wild and Domesticated Maize Provide Ecological and Evolutionary Insight
- (2012) Matthew B. Hufford et al. PLoS One
- Historical genomics of North American maize
- (2012) J. van Heerwaarden et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Teosinte as a model system for population and ecological genomics
- (2012) Matthew B. Hufford et al. TRENDS IN GENETICS
- Population Genomics of Inversion Polymorphisms in Drosophila melanogaster
- (2012) Russell B. Corbett-Detig et al. PLoS Genetics
- Three new teosintes (Zea spp., Poaceae) from México
- (2011) J. J. Sánchez G. et al. AMERICAN JOURNAL OF BOTANY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians
- (2011) Maud I. Tenaillon et al. Genome Biology and Evolution
- Testing for Ancient Admixture between Closely Related Populations
- (2011) Eric Y. Durand et al. MOLECULAR BIOLOGY AND EVOLUTION
- GCTA: A Tool for Genome-wide Complex Trait Analysis
- (2010) Jian Yang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- DensiTree: making sense of sets of phylogenetic trees
- (2010) R. R. Bouckaert BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
- (2010) Petr Novák et al. BMC BIOINFORMATICS
- Population differentiation as a test for selective sweeps
- (2010) H. Chen et al. GENOME RESEARCH
- Construction of intraspecific linkage maps, detection of a chromosome inversion, and mapping of QTL for constitutive root aerenchyma formation in the teosinte Zea nicaraguensis
- (2010) Yoshiro Mano et al. MOLECULAR BREEDING
- Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize
- (2010) Xiaohong Yang et al. MOLECULAR BREEDING
- A Draft Sequence of the Neandertal Genome
- (2010) R. E. Green et al. SCIENCE
- A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation
- (2010) David B. Lowry et al. PLOS BIOLOGY
- ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
- (2009) Gabriela Bindea et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Historical Divergence and Gene Flow in the Genus Zea
- (2009) J. Ross-Ibarra et al. GENETICS
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Crosstalk between Cold Response and Flowering in Arabidopsis Is Mediated through the Flowering-Time Gene SOC1 and Its Upstream Negative Regulator FLC
- (2009) E. Seo et al. PLANT CELL
- Starch grain and phytolith evidence for early ninth millennium B.P. maize from the Central Balsas River Valley, Mexico
- (2009) D. R. Piperno et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Genetic Architecture of Maize Flowering Time
- (2009) E. S. Buckler et al. SCIENCE
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