Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples

Genome scan reveals selection acting on genes linked to stress response in wild pearl millet

(2016) Cécile Berthouly-Salazar et al.   MOLECULAR ECOLOGY

Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P

(2015) Gabriel C Azevedo et al.   BMC PLANT BIOLOGY

Diversity and Genetics of Tassel Branch Numbers in Maize

(2015) James L. Brewbaker   CROP SCIENCE

Independent Molecular Basis of Convergent Highland Adaptation in Maize

(2015) Shohei Takuno et al.   GENETICS

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

Characterization of Sugarcane Mosaic Virus Scmv1 and Scmv2 Resistance Regions by Regional Association Analysis in Maize

(2015) Pengfei Leng et al.   PLoS One

Independent Molecular Basis of Convergent Highland Adaptation in Maize

(2015) Shohei Takuno et al.   GENETICS

Maize protein phosphatase gene family: identification and molecular characterization

(2014) Kaifa Wei et al.   BMC GENOMICS

Genomic Signature of Adaptation to Climate inMedicago truncatula

(2014) Jeremy B. Yoder et al.   GENETICS

Meta-analysis and candidate gene mining of low-phosphorus tolerance in maize

(2014) Hongwei Zhang et al.   Journal of Integrative Plant Biology

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

On the unfounded enthusiasm for soft selective sweeps

(2014) Jeffrey D Jensen   Nature Communications

Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

(2014) Alan O. Bergland et al.   PLoS Genetics

Combined linkage and association mapping reveals candidates for Scmv1, a major locus involved in resistance to sugarcane mosaic virus (SCMV) in maize

(2013) Yongfu Tao et al.   BMC PLANT BIOLOGY

Evolutionary and plastic responses to climate change in terrestrial plant populations

(2013) Steven J. Franks et al.   Evolutionary Applications

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

(2013) M. I. Fariello et al.   GENETICS

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Complex Patterns of Local Adaptation in Teosinte

(2013) Tanja Pyhäjärvi et al.   Genome Biology and Evolution

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Population genomic footprints of selection and associations with climate in natural populations ofArabidopsis hallerifrom the Alps

(2013) Martin C. Fischer et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Genome size variation in wild and cultivated maize along altitudinal gradients

(2013) Concepción M. Díez et al.   NEW PHYTOLOGIST

Population genomics of rapid adaptation by soft selective sweeps

(2013) Philipp W. Messer et al.   TRENDS IN ECOLOGY & EVOLUTION

The Genomic Signature of Crop-Wild Introgression in Maize

(2013) Matthew B. Hufford et al.   PLoS Genetics

Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

(2012) Zhou Fang et al.   GENETICS

Genic and nongenic contributions to natural variation of quantitative traits in maize

(2012) X. Li et al.   GENOME RESEARCH

Local Adaptation in the Flowering-Time Gene Network of Balsam Poplar, Populus balsamifera L.

(2012) S. R. Keller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster

(2012) Yuan Zhu et al.   PLoS One

Inferences from the Historical Distribution of Wild and Domesticated Maize Provide Ecological and Evolutionary Insight

(2012) Matthew B. Hufford et al.   PLoS One

LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data

(2012) Alison F. Feder et al.   PLoS One

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

Teosinte as a model system for population and ecological genomics

(2012) Matthew B. Hufford et al.   TRENDS IN GENETICS

ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT

(2011) Sam Yeaman et al.   EVOLUTION

Adaptive Potential of Northernmost Tree Populations to Climate Change, with Emphasis on Scots Pine (Pinus sylvestris L.)

(2011) O. Savolainen et al.   JOURNAL OF HEREDITY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Phosphate Deprivation in Maize: Genetics and Genomics

(2011) C. Calderon-Vazquez et al.   PLANT PHYSIOLOGY

A Common Genetic Determinism for Sensitivities to Soil Water Deficit and Evaporative Demand: Meta-Analysis of Quantitative Trait Loci and Introgression Lines of Maize

(2011) C. Welcker et al.   PLANT PHYSIOLOGY

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Climate Trends and Global Crop Production Since 1980

(2011) D. B. Lobell et al.   SCIENCE

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene

(2011) Fabio Marroni et al.   Tree Genetics & Genomes

Crop production on acidic soils: overcoming aluminium toxicity and phosphorus deficiency

(2010) Shao Jian Zheng   ANNALS OF BOTANY

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) Maxime Bonhomme et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Insight into the genetic bases of climatic adaptation in experimentally evolving wheat populations

(2010) BÉNÉDICTE RHONÉ et al.   MOLECULAR ECOLOGY

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Historical Divergence and Gene Flow in the Genus Zea

(2009) J. Ross-Ibarra et al.   GENETICS

The Palomero Genome Suggests Metal Effects on Domestication

(2009) J.-P. Vielle-Calzada et al.   SCIENCE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

GEOGRAPHIC VARIATION IN ADAPTATION AT THE MOLECULAR LEVEL: A CASE STUDY OF PLANT IMMUNITY GENES

(2008) David A. Moeller et al.   EVOLUTION

The Genetic Architecture of Complex Traits in Teosinte (Zea mays ssp. parviglumis): New Evidence From Association Mapping

(2008) A. L. Weber et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Potential contribution of natural enemies to patterns of local adaptation in plants

(2008) Lisèle Crémieux et al.   NEW PHYTOLOGIST

A Meta-Analysis of Local Adaptation in Plants

(2008) Roosa Leimu et al.   PLoS One