Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude

The genetic architecture of teosinte catalyzed and constrained maize domestication

(2019) Chin Jian Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why structure matters

(2019) Nick Barton et al.   eLife

Polygenic adaptation on height is overestimated due to uncorrected stratification in genome-wide association studies

(2019) Mashaal Sohail et al.   eLife

Tread Lightly Interpreting Polygenic Tests of Selection

(2018) John Novembre et al.   GENETICS

Trait differentiation and adaptation of plants along elevation gradients

(2018) Aud H. Halbritter et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Eco-Evolutionary Genomics of Chromosomal Inversions

(2018) Maren Wellenreuther et al.   TRENDS IN ECOLOGY & EVOLUTION

Global genetic differentiation of complex traits shaped by natural selection in humans

(2018) Jing Guo et al.   Nature Communications

Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays

(2018) Paul Bilinski et al.   PLoS Genetics

Tread Lightly Interpreting Polygenic Tests of Selection

(2018) John Novembre et al.   GENETICS

Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana

(2018) Hannes Dittberner et al.   MOLECULAR ECOLOGY

Connecting genomic patterns of local adaptation and niche suitability in teosintes

(2017) J. A. Aguirre-Liguori et al.   MOLECULAR ECOLOGY

Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples

(2017) M.-A. Fustier et al.   MOLECULAR ECOLOGY

Genome architecture enables local adaptation of Atlantic cod despite high connectivity

(2017) Julia M. I. Barth et al.   MOLECULAR ECOLOGY

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

(2016) Carlos Alonso-Blanco et al.   CELL

Evidence of divergent selection for drought and cold tolerance at landscape and local scales inAbies albaMill. in the French Mediterranean Alps

(2016) Anna M. Roschanski et al.   MOLECULAR ECOLOGY

Remarkable life history polymorphism may be evolving under divergent selection in the silverleaf sunflower

(2016) Brook T. Moyers et al.   MOLECULAR ECOLOGY

Identification of genetic variants associated with maize flowering time using an extremely large multi-genetic background population

(2016) Yong-xiang Li et al.   PLANT JOURNAL

Evolution of a butterfly dispersal syndrome

(2016) Delphine Legrand et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Modern Approaches to Local Adaptation

(2015) Michael C. Whitlock   AMERICAN NATURALIST

Intraspecific variation in stomatal traits, leaf traits and physiology reflects adaptation along aridity gradients in a South African shrub

(2015) Jane E. Carlson et al.   ANNALS OF BOTANY

Adaptive divergence in the monkey flower Mimulus guttatus is maintained by a chromosomal inversion

(2015) Alex D. Twyford et al.   EVOLUTION

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication

(2015) Ryan J. Haasl et al.   MOLECULAR ECOLOGY

The genetic architecture of leaf number and its genetic relationship to flowering time in maize

(2015) Dan Li et al.   NEW PHYTOLOGIST

MaizeGDB update: new tools, data and interface for the maize model organism database

(2015) Carson M. Andorf et al.   NUCLEIC ACIDS RESEARCH

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Recovering Power in Association Mapping Panels with Variable Levels of Linkage Disequilibrium

(2014) Renaud Rincent et al.   GENETICS

Evolutionary responses of tree phenology to the combined effects of assortative mating, gene flow and divergent selection

(2014) J-P Soularue et al.   HEREDITY

Phenotypic divergence of the common toad (Bufo bufo) along an altitudinal gradient: evidence for local adaptation

(2014) E Luquet et al.   HEREDITY

The roles of genetic drift and natural selection in quantitative trait divergence along an altitudinal gradient in Arabidopsis thaliana

(2014) Y Luo et al.   HEREDITY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

QST-FSTcomparisons with unbalanced half-sib designs

(2014) Kimberly J. Gilbert et al.   Molecular Ecology Resources

Replicate altitudinal clines reveal that evolutionary flexibility underlies adaptation to drought stress in annualMimulus guttatus

(2014) Nicholas J. Kooyers et al.   NEW PHYTOLOGIST

Genetic and Morphological Divergence in Three Strains of Brook Trout Salvelinus fontinalis Commonly Stocked in Lake Superior

(2014) Garrett J. McKinney et al.   PLoS One

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Frost resistance in alpine woody plants

(2014) Gilbert Neuner   Frontiers in Plant Science

Adaptation through chromosomal inversions in Anopheles

(2014) Diego Ayala et al.   Frontiers in Genetics

DISENTANGLING THE EFFECTS OF GEOGRAPHIC AND ECOLOGICAL ISOLATION ON GENETIC DIFFERENTIATION

(2013) Gideon S. Bradburd et al.   EVOLUTION

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Complex Patterns of Local Adaptation in Teosinte

(2013) Tanja Pyhäjärvi et al.   Genome Biology and Evolution

An update of high-resolution monthly climate surfaces for Mexico

(2013) Angela P. Cuervo-Robayo et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement

(2013) Kassa Semagn et al.   MOLECULAR BREEDING

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

driftsel: an R package for detecting signals of natural selection in quantitative traits

(2013) M. Karhunen et al.   Molecular Ecology Resources

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Genome size variation in wild and cultivated maize along altitudinal gradients

(2013) Concepción M. Díez et al.   NEW PHYTOLOGIST

Adaptation of Maize to Temperate Climates: Mid-Density Genome-Wide Association Genetics and Diversity Patterns Reveal Key Genomic Regions, with a Major Contribution of the Vgt2 (ZCN8) Locus

(2013) Sophie Bouchet et al.   PLoS One

Flowering Time in Maize: Linkage and Epistasis at a Major Effect Locus

(2012) E. Durand et al.   GENETICS

Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

(2012) Zhou Fang et al.   GENETICS

The genetic differentiation at quantitative trait loci under local adaptation

(2012) VALÉRIE LE CORRE et al.   MOLECULAR ECOLOGY

Inferences from the Historical Distribution of Wild and Domesticated Maize Provide Ecological and Evolutionary Insight

(2012) Matthew B. Hufford et al.   PLoS One

A Unifying Model for the Analysis of Phenotypic, Genetic, and Geographic Data

(2012) Gilles Guillot et al.   SYSTEMATIC BIOLOGY

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT

(2011) Sam Yeaman et al.   EVOLUTION

A New Method to Uncover Signatures of Divergent and Stabilizing Selection in Quantitative Traits

(2011) Otso Ovaskainen et al.   GENETICS

Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness

(2011) B Mangin et al.   HEREDITY

Natural selection drives clinal life history patterns in the perennial sunflower species, Helianthus maximiliani

(2011) TAKESHI KAWAKAMI et al.   MOLECULAR ECOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

The FT-Like ZCN8 Gene Functions as a Floral Activator and Is Involved in Photoperiod Sensitivity in Maize

(2011) X. Meng et al.   PLANT CELL

Altitudinal and Climatic Adaptation Is Mediated by Flowering Traits and FRI, FLC, and PHYC Genes in Arabidopsis

(2011) B. Mendez-Vigo et al.   PLANT PHYSIOLOGY

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

To what extent is altitudinal variation of functional traits driven by genetic adaptation in European oak and beech?

(2011) C. C. Bresson et al.   TREE PHYSIOLOGY

Evolutionary genetics of plant adaptation

(2011) Jill T. Anderson et al.   TRENDS IN GENETICS

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) Maxime Bonhomme et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina

(2010) BÉNÉDICTE N. PONCET et al.   MOLECULAR ECOLOGY

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

(2010) David B. Lowry et al.   PLOS BIOLOGY

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

(2009) Joe Hereford   AMERICAN NATURALIST

Historical Divergence and Gene Flow in the Genus Zea

(2009) J. Ross-Ibarra et al.   GENETICS

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

The Genetic Architecture of Maize Flowering Time

(2009) E. S. Buckler et al.   SCIENCE

COMPARING CLINES ON MOLECULAR AND PHENOTYPIC TRAITS IN HYBRID ZONES: A WINDOW ON TENSION ZONE MODELS

(2008) Laurène Gay et al.   EVOLUTION

The Genetic Architecture of Complex Traits in Teosinte (Zea mays ssp. parviglumis): New Evidence From Association Mapping

(2008) A. L. Weber et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

A Meta-Analysis of Local Adaptation in Plants

(2008) Roosa Leimu et al.   PLoS One