Learning global dependencies and multi-semantics within heterogeneous graph for predicting disease-related lncRNAs

gGATLDA: lncRNA-disease association prediction based on graph-level graph attention network

(2022) Li Wang et al.   BMC BIOINFORMATICS

Prediction of lncRNA-disease association based on a Laplace normalized random walk with restart algorithm on heterogeneous networks

(2022) Liugen Wang et al.   BMC BIOINFORMATICS

Fully connected autoencoder and convolutional neural network with attention-based method for inferring disease-related lncRNAs

(2022) Ping Xuan et al.   BRIEFINGS IN BIOINFORMATICS

BiGAN: LncRNA-disease association prediction based on bidirectional generative adversarial network

(2021) Qiang Yang et al.   BMC BIOINFORMATICS

GCRFLDA: scoring lncRNA-disease associations using graph convolution matrix completion with conditional random field

(2021) Yongxian Fan et al.   BRIEFINGS IN BIOINFORMATICS

GANLDA: Graph attention network for lncRNA-disease associations prediction

(2021) Wei Lan et al.   NEUROCOMPUTING

Graph Triple-Attention Network for Disease-Related LncRNA Prediction

(2021) Ping Xuan et al.   IEEE Journal of Biomedical and Health Informatics

A random forest based computational model for predicting novel lncRNA-disease associations

(2020) Dengju Yao et al.   BMC BIOINFORMATICS

Attentional multi-level representation encoding based on convolutional and variance autoencoders for lncRNA–disease association prediction

(2020) Nan Sheng et al.   BRIEFINGS IN BIOINFORMATICS

GAERF: predicting lncRNA-disease associations by graph auto-encoder and random forest

(2020) Qing-Wen Wu et al.   BRIEFINGS IN BIOINFORMATICS

Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data

(2020) Yue Gao et al.   NUCLEIC ACIDS RESEARCH

A Probabilistic Matrix Factorization Method for Identifying lncRNA-disease Associations

(2019) Zhanwei Xuan et al.   Genes

Dual Convolutional Neural Networks With Attention Mechanisms Based Method for Predicting Disease-Related lncRNA Genes

(2019) Ping Xuan et al.   Frontiers in Genetics

LDAPred: A Method Based on Information Flow Propagation and a Convolutional Neural Network for the Prediction of Disease-Associated lncRNAs

(2019) Ping Xuan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Graph Convolutional Network and Convolutional Neural Network Based Method for Predicting lncRNA-Disease Associations

(2019) Xuan et al.   Cells

Prediction of lncRNA–disease associations based on inductive matrix completion

(2018) Chengqian Lu et al.   BIOINFORMATICS

A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-disease Association Network

(2018) pengyao ping et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Construction of a specific SVM classifier and identification of molecular markers for lung adenocarcinoma based on lncRNA-miRNA-mRNA network

(2018) Jingming Zhao et al.   OncoTargets and Therapy

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

HMDD v3.0: a database for experimentally supported human microRNA–disease associations

(2018) Zhou Huang et al.   NUCLEIC ACIDS RESEARCH

Non-coding RNAs: new biomarkers and therapeutic targets for esophageal cancer

(2017) Xiaobin Hou et al.   Oncotarget

Global network random walk for predicting potential human lncRNA-disease associations

(2017) Changlong Gu et al.   Scientific Reports

Mechanisms of long noncoding RNA function in development and disease

(2016) Sandra U. Schmitz et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features

(2015) Tingting Zhao et al.   Molecular BioSystems

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

(2015) Takaya Saito et al.   PLoS One

Integrated analysis of long non-coding RNAs and mRNA expression profiles reveals the potential role of lncRNAs in gastric cancer pathogenesis

(2014) XIAO-CONG LIN et al.   INTERNATIONAL JOURNAL OF ONCOLOGY

A Computational Framework to Infer Human Disease-Associated Long Noncoding RNAs

(2014) Ming-Xi Liu et al.   PLoS One

A bioinformatics method for predicting long noncoding RNAs associated with vascular disease

(2014) JianWei Li et al.   Science China-Life Sciences

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

Long Noncoding RNAs: Cellular Address Codes in Development and Disease

(2013) Pedro J. Batista et al.   CELL

Long Noncoding RNAs: Past, Present, and Future

(2013) J. T. Y. Kung et al.   GENETICS

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

(2013) Jun-Hao Li et al.   NUCLEIC ACIDS RESEARCH

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

Genome-wide analysis of long noncoding RNA stability

(2012) M. B. Clark et al.   GENOME RESEARCH

Modular regulatory principles of large non-coding RNAs

(2012) Mitchell Guttman et al.   NATURE

Long noncoding RNAs and human disease

(2011) Orly Wapinski et al.   TRENDS IN CELL BIOLOGY

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS