Attentional multi-level representation encoding based on convolutional and variance autoencoders for lncRNA–disease association prediction

A Probabilistic Matrix Factorization Method for Identifying lncRNA-disease Associations

(2019) Zhanwei Xuan et al.   Genes

Landscape of tumor suppressor long noncoding RNAs in breast cancer

(2019) Boran Pang et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information

(2019) Xiao-Nan Fan et al.   BMC BIOINFORMATICS

Dual Convolutional Neural Networks With Attention Mechanisms Based Method for Predicting Disease-Related lncRNA Genes

(2019) Ping Xuan et al.   Frontiers in Genetics

A novel collaborative filtering model for LncRNA-disease association prediction based on the Naïve Bayesian classifier

(2019) Jingwen Yu et al.   BMC BIOINFORMATICS

LDAPred: A Method Based on Information Flow Propagation and a Convolutional Neural Network for the Prediction of Disease-Associated lncRNAs

(2019) Ping Xuan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

DNILMF-LDA: Prediction of lncRNA-Disease Associations by Dual-Network Integrated Logistic Matrix Factorization and Bayesian Optimization

(2019) Yan Li et al.   Genes

Graph Convolutional Network and Convolutional Neural Network Based Method for Predicting lncRNA-Disease Associations

(2019) Xuan et al.   Cells

AHNG: Representation learning on attributed heterogeneous network

(2019) Mengyue Liu et al.   Information Fusion

Prediction of lncRNA–disease associations based on inductive matrix completion

(2018) Chengqian Lu et al.   BIOINFORMATICS

A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-disease Association Network

(2018) pengyao ping et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

TPGLDA: Novel prediction of associations between lncRNAs and diseases via lncRNA-disease-gene tripartite graph

(2018) Liang Ding et al.   Scientific Reports

Computational models for lncRNA function prediction and functional similarity calculation

(2018) Xing Chen et al.   Briefings in Functional Genomics

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

HMDD v3.0: a database for experimentally supported human microRNA–disease associations

(2018) Zhou Huang et al.   NUCLEIC ACIDS RESEARCH

Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers

(2018) Yue Gao et al.   NUCLEIC ACIDS RESEARCH

A peptide encoded by circular form of LINC-PINT suppresses oncogenic transcriptional elongation in glioblastoma

(2018) Maolei Zhang et al.   Nature Communications

Integrating Multiple Heterogeneous Networks for Novel LncRNA-disease Association Inference

(2017) Jingpu Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Global network random walk for predicting potential human lncRNA-disease associations

(2017) Changlong Gu et al.   Scientific Reports

A Computational Approach for Identifying Synergistic Drug Combinations

(2017) Kaitlyn M. Gayvert et al.   PLoS Computational Biology

FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model

(2016) Xing Chen et al.   Oncotarget

IRWRLDA: improved random walk with restart for lncRNA-disease association prediction

(2016) Xing Chen et al.   Oncotarget

NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning

(2016) Xing Chen et al.   PLoS Computational Biology

Drug–target interaction prediction: databases, web servers and computational models

(2015) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

MiR-17-92 cluster promotes hepatocarcinogenesis

(2015) Hanqing Zhu et al.   CARCINOGENESIS

Heterogeneous Network Model to Infer Human Disease-Long Intergenic Non-Coding RNA Associations

(2015) Gamage Upeksha Ganegoda et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Prioritizing candidate disease-related long non-coding RNAs by walking on the heterogeneous lncRNA and disease network

(2015) Meng Zhou et al.   Molecular BioSystems

KATZLDA: KATZ measure for the lncRNA-disease association prediction

(2015) Xing Chen   Scientific Reports

Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity

(2015) Xing Chen et al.   Scientific Reports

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

(2015) Takaya Saito et al.   PLoS One

Toward more realistic drug-target interaction predictions

(2014) T. Pahikkala et al.   BRIEFINGS IN BIOINFORMATICS

Inferring novel lncRNA–disease associations based on a random walk model of a lncRNA functional similarity network

(2014) Jie Sun et al.   Molecular BioSystems

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

(2013) Jun-Hao Li et al.   NUCLEIC ACIDS RESEARCH

Systematic Transcriptome Wide Analysis of lncRNA-miRNA Interactions

(2013) Saakshi Jalali et al.   PLoS One

microRNA Involvement in Hepatocellular Carcinoma

(2012) Massimo Negrini et al.   Anti-Cancer Agents in Medicinal Chemistry

Drug–target interaction prediction by learning from local information and neighbors

(2012) Jian-Ping Mei et al.   BIOINFORMATICS

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Modular regulatory principles of large non-coding RNAs

(2012) Mitchell Guttman et al.   NATURE

Molecular Mechanisms of Long Noncoding RNAs

(2011) Kevin C. Wang et al.   MOLECULAR CELL

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

Long noncoding RNAs and human disease

(2011) Orly Wapinski et al.   TRENDS IN CELL BIOLOGY

miR-124 suppresses multiple steps of breast cancer metastasis by targeting a cohort of pro-metastatic genes in vitro

(2011) Xiao-Bin Lv et al.   Chinese Journal of Cancer

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes

(2010) M.-C. Tsai et al.   SCIENCE

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters

(2008) Leighton J. Core et al.   SCIENCE