标题
The analysis of Gene Regulatory Networks in plant evo-devo
作者
关键词
-
出版物
JOURNAL OF EXPERIMENTAL BOTANY
Volume 67, Issue 9, Pages 2549-2563
出版商
Oxford University Press (OUP)
发表日期
2016-05-09
DOI
10.1093/jxb/erw119
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genome-wide identification of the Phaseolus vulgaris sRNAome using small RNA and degradome sequencing
- (2015) Damien Formey et al. BMC GENOMICS
- Genome-wide histone acetylation correlates with active transcription in maize
- (2015) Wei Zhang et al. GENOMICS
- Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor
- (2015) Jose M. Muiño et al. MOLECULAR BIOLOGY AND EVOLUTION
- The expanding world of small RNAs in plants
- (2015) Filipe Borges et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- RSAT 2015: Regulatory Sequence Analysis Tools
- (2015) Alejandra Medina-Rivera et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
- (2015) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- The early evolution of land plants, from fossils to genomics: a commentary on Lang (1937) ‘On the plant-remains from the Downtonian of England and Wales'
- (2015) Dianne Edwards et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- MORPHEUS, a Webtool for Transcription Factor Binding Analysis Using Position Weight Matrices with Dependency
- (2015) Eugenio Gómez Minguet et al. PLoS One
- Analysis of Histones H3 and H4 Reveals Novel and Conserved Post-Translational Modifications in Sugarcane
- (2015) Izabel Moraes et al. PLoS One
- Importance of Mediator complex in the regulation and integration of diverse signaling pathways in plants
- (2015) Subhasis Samanta et al. Frontiers in Plant Science
- An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum
- (2015) Alaguraj Veluchamy et al. GENOME BIOLOGY
- Evolution of DNA Specificity in a Transcription Factor Family Produced a New Gene Regulatory Module
- (2014) Alesia N. McKeown et al. CELL
- Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors
- (2014) D. Roeland Boer et al. CELL
- Gene activation and cell fate control in plants: a chromatin perspective
- (2014) Julia Engelhorn et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Transcriptomics of developing embryos and organs: A raising tool for evo-devo
- (2014) Sophie Pantalacci et al. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION
- Toward More Accurate Ancestral Protein Genotype–Phenotype Reconstructions with the Use of Species Tree-Aware Gene Trees
- (2014) Mathieu Groussin et al. MOLECULAR BIOLOGY AND EVOLUTION
- A comparative encyclopedia of DNA elements in the mouse genome
- (2014) Feng Yue et al. NATURE
- Historical contingency and its biophysical basis in glucocorticoid receptor evolution
- (2014) Michael J. Harms et al. NATURE
- Spatially resolved transcriptomics and beyond
- (2014) Nicola Crosetto et al. NATURE REVIEWS GENETICS
- Cardamine hirsuta: a versatile genetic system for comparative studies
- (2014) Angela S. Hay et al. PLANT JOURNAL
- Strepsiptera, Phylogenomics and the Long Branch Attraction Problem
- (2014) Bastien Boussau et al. PLoS One
- Phylotranscriptomic analysis of the origin and early diversification of land plants
- (2014) Norman J. Wickett et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis
- (2014) A. Para et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA-binding specificities of plant transcription factors and their potential to define target genes
- (2014) José M. Franco-Zorrilla et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The new frontier of genome engineering with CRISPR-Cas9
- (2014) J. A. Doudna et al. SCIENCE
- Evolutionary history of plant microRNAs
- (2014) Richard S. Taylor et al. TRENDS IN PLANT SCIENCE
- Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization
- (2014) Danelle K. Seymour et al. PLoS Genetics
- Data access for the 1,000 Plants (1KP) project
- (2014) Naim Matasci et al. GigaScience
- TPMS: a set of utilities for querying collections of gene trees
- (2013) Thomas Bigot et al. BMC BIOINFORMATICS
- DNA-Binding Specificities of Human Transcription Factors
- (2013) Arttu Jolma et al. CELL
- A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements fromArabidopsis thaliana
- (2013) Mohammad Amin Omidbakhshfard et al. Journal of Integrative Plant Biology
- Genome-Wide Analysis of Histone Modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica
- (2013) Zhou Du et al. Molecular Plant
- RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond
- (2013) Stephane E. Castel et al. NATURE REVIEWS GENETICS
- Lessons on RNA Silencing Mechanisms in Plants from Eukaryotic Argonaute Structures
- (2013) Christian Poulsen et al. PLANT CELL
- The Next Generation of Transcription Factor Binding Site Prediction
- (2013) Anthony Mathelier et al. PLoS Computational Biology
- Dynamics and Adaptive Benefits of Protein Domain Emergence and Arrangements during Plant Genome Evolution
- (2012) Anna R. Kersting et al. Genome Biology and Evolution
- A Light-Regulated Genetic Module Was Recruited to Carpel Development in Arabidopsis following a Structural Change to SPATULA
- (2012) M. C. Reymond et al. PLANT CELL
- Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects
- (2012) Yi Sang et al. PLANT JOURNAL
- Distinct modes of DNA accessibility in plant chromatin
- (2012) Huan Shu et al. Nature Communications
- H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions
- (2012) Manching Ku et al. GENOME BIOLOGY
- Signals and Combinatorial Functions of Histone Modifications
- (2011) Tamaki Suganuma et al. Annual Review of Biochemistry
- Histone modifications in transcriptional activation during plant development
- (2011) Alexandre Berr et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- Ultra-fast sequence clustering from similarity networks with SiLiX
- (2011) Vincent Miele et al. BMC BIOINFORMATICS
- Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
- (2011) Ho Sung Rhee et al. CELL
- Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
- (2011) François Roudier et al. EMBO JOURNAL
- Chromatin: constructing the big picture
- (2011) Bas van Steensel EMBO JOURNAL
- Coordinated histone modifications are associated with gene expression variation within and between species
- (2011) M. Ha et al. GENOME RESEARCH
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs
- (2011) Morgane Thomas-Chollier et al. Nature Protocols
- Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
- (2011) Hongcang Gu et al. Nature Protocols
- The CHD3 Chromatin Remodeler PICKLE and Polycomb Group Proteins Antagonistically Regulate Meristem Activity in the Arabidopsis Root
- (2011) E. Aichinger et al. PLANT CELL
- Improved protein-binding microarrays for the identification of DNA-binding specificities of transcription factors
- (2011) Marta Godoy et al. PLANT JOURNAL
- Multigene Phylogeny of the Green Lineage Reveals the Origin and Diversification of Land Plants
- (2010) Cédric Finet et al. CURRENT BIOLOGY
- Regulation of transcription in plants: mechanisms controlling developmental switches
- (2010) Kerstin Kaufmann et al. NATURE REVIEWS GENETICS
- The evolutionary-developmental analysis of plant microRNAs
- (2010) S. Jasinski et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Parallel structural evolution of auxin response factors in the angiosperms
- (2010) Cédric Finet et al. PLANT JOURNAL
- Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
- (2010) et al. SCIENCE
- MOODS: fast search for position weight matrix matches in DNA sequences
- (2009) J. Korhonen et al. BIOINFORMATICS
- An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
- (2009) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors
- (2009) Michael F Berger et al. Nature Protocols
- The analysis of entire gene promoters by surface plasmon resonance
- (2009) Edwige Moyroud et al. PLANT JOURNAL
- Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower
- (2009) Kerstin Kaufmann et al. PLOS BIOLOGY
- Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution
- (2008) Sean B. Carroll CELL
- Identification of conserved microRNAs and their target genes in tomato (Lycopersicon esculentum)
- (2008) Zujun Yin et al. GENE
- Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
- (2008) H. Tang et al. GENOME RESEARCH
- Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules
- (2008) Jean-Valery Turatsinze et al. Nature Protocols
- The class E floral homeotic protein SEPALLATA3 is sufficient to loop DNA in ‘floral quartet’-like complexes in vitro
- (2008) Rainer Melzer et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now