标题
Viral biogeography of the mammalian gut and parenchymal organs
作者
关键词
-
出版物
Nature Microbiology
Volume 7, Issue 8, Pages 1301-1311
出版商
Springer Science and Business Media LLC
发表日期
2022-08-03
DOI
10.1038/s41564-022-01178-w
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Microbiome differential abundance methods produce different results across 38 datasets
- (2022) Jacob T. Nearing et al. Nature Communications
- Massive expansion of human gut bacteriophage diversity
- (2021) Luis F. Camarillo-Guerrero et al. CELL
- Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features
- (2021) Natalya Yutin et al. Nature Communications
- VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
- (2021) Jiarong Guo et al. Microbiome
- Biases in Viral Metagenomics-Based Detection, Cataloguing and Quantification of Bacteriophage Genomes in Human Faeces, a Review
- (2021) Julie Callanan et al. Microorganisms
- Bacteriophage uptake by mammalian cell layers represents a potential sink that may impact phage therapy
- (2021) Marion C. Bichet et al. iScience
- BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains
- (2021) Adam J. Hockenberry et al. PeerJ
- Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens
- (2021) Emma Guerin et al. Microbiome
- Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis
- (2021) Andrey N. Shkoporov et al. BMC BIOLOGY
- Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
- (2021) Stephen Nayfach et al. Nature Microbiology
- Global Organization and Proposed Megataxonomy of the Virus World
- (2020) Eugene V. Koonin et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- New insights into intestinal phages
- (2020) R. Sausset et al. Mucosal Immunology
- The crAss-like Phage Group: How Metagenomics Reshaped the Human Virome
- (2020) Eugene V. Koonin et al. TRENDS IN MICROBIOLOGY
- Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages
- (2020) Benjamin A. Siranosian et al. Nature Communications
- Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
- (2020) Evelien M. Adriaenssens et al. ARCHIVES OF VIROLOGY
- The stepwise assembly of the neonatal virome is modulated by breastfeeding
- (2020) Guanxiang Liang et al. NATURE
- The Spatial Heterogeneity of the Gut Limits Predation and Fosters Coexistence of Bacteria and Bacteriophages
- (2020) Marta Lourenço et al. Cell Host & Microbe
- Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron
- (2020) Nathan T. Porter et al. Nature Microbiology
- The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut
- (2020) Ann C. Gregory et al. Cell Host & Microbe
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes
- (2020) Stephen Nayfach et al. NATURE BIOTECHNOLOGY
- Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities
- (2020) Manuel Kleiner et al. Microbiome
- Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
- (2019) Edoardo Pasolli et al. CELL
- Choice of assembly software has a critical impact on virome characterisation
- (2019) Thomas D. S. Sutton et al. Microbiome
- Modelling microbiome recovery after antibiotics using a stability landscape framework
- (2019) Liam P. Shaw et al. ISME Journal
- The Battle Within: Interactions of Bacteriophages and Bacteria in the Gastrointestinal Tract
- (2019) Luisa De Sordi et al. Cell Host & Microbe
- Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins
- (2019) J. Leonardo Moreno-Gallego et al. Cell Host & Microbe
- Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
- Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
- (2019) Ho Bin Jang et al. NATURE BIOTECHNOLOGY
- Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model
- (2019) Bryan B. Hsu et al. Cell Host & Microbe
- Phage-Resistant Phase-Variant Sub-populations Mediate Herd Immunity Against Bacteriophage Invasion of Bacterial Meta-Populations
- (2019) Christopher J. R. Turkington et al. Frontiers in Microbiology
- Normative values for region‐specific colonic and gastrointestinal transit times in 111 healthy volunteers using the 3D‐Transit electromagnet tracking system: Influence of age, gender, and body mass index
- (2019) Gursharan Kaur Nandhra et al. NEUROGASTROENTEROLOGY AND MOTILITY
- Genetic transduction by phages and chromosomal islands: The new and noncanonical
- (2019) Yin Ning Chiang et al. PLoS Pathogens
- The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
- Detecting contamination in viromes using ViromeQC
- (2019) Moreno Zolfo et al. NATURE BIOTECHNOLOGY
- Gut Bacteriophage: Current Understanding and Challenges
- (2019) Thomas D. S. Sutton et al. Frontiers in Endocrinology
- Molecular epidemiology and viremia of porcine astrovirus in pigs from Guangxi province of China
- (2019) Yifeng Qin et al. BMC Veterinary Research
- Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
- (2019) Adam G. Clooney et al. Cell Host & Microbe
- Mucin gel assembly is controlled by a collective action of non-mucin proteins, disulfide bridges, Ca2+-mediated links, and hydrogen bonding
- (2018) Oliver W. Meldrum et al. Scientific Reports
- Reproducible protocols for metagenomic analysis of human faecal phageomes
- (2018) Andrey N. Shkoporov et al. Microbiome
- Phage puppet masters of the marine microbial realm
- (2018) Mya Breitbart et al. Nature Microbiology
- Stability of the human faecal microbiome in a cohort of adult men
- (2018) Raaj S. Mehta et al. Nature Microbiology
- Microbial Eukaryotes: a Missing Link in Gut Microbiome Studies
- (2018) Isabelle Laforest-Lapointe et al. mSystems
- Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly
- (2018) Inés Martínez et al. eLife
- Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut
- (2018) Emma Guerin et al. Cell Host & Microbe
- Minimum Information about an Uncultivated Virus Genome (MIUViG)
- (2018) Simon Roux et al. NATURE BIOTECHNOLOGY
- Genome hypermobility by lateral transduction
- (2018) John Chen et al. SCIENCE
- Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea
- (2018) Guoyan Zhao et al. VIROLOGY
- metaSPAdes: a new versatile metagenomic assembler
- (2017) Sergey Nurk et al. GENOME RESEARCH
- Strains, functions and dynamics in the expanded Human Microbiome Project
- (2017) Jason Lloyd-Price et al. NATURE
- Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life
- (2017) Linda Wampach et al. Frontiers in Microbiology
- Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut
- (2017) Natalya Yutin et al. Nature Microbiology
- Healthy human gut phageome
- (2016) Pilar Manrique et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The healthy human microbiome
- (2016) Jason Lloyd-Price et al. Genome Medicine
- Towards quantitative viromics for both double-stranded and single-stranded DNA viruses
- (2016) Simon Roux et al. PeerJ
- Piggyback-the-Winner in host-associated microbial communities
- (2016) Cynthia B Silveira et al. npj Biofilms and Microbiomes
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes
- (2015) Manuel Kleiner et al. BMC GENOMICS
- Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
- (2015) Jason M. Norman et al. CELL
- Biogeography of the Intestinal Mucosal and Lumenal Microbiome in the Rhesus Macaque
- (2015) Koji Yasuda et al. Cell Host & Microbe
- Gut biogeography of the bacterial microbiota
- (2015) Gregory P. Donaldson et al. NATURE REVIEWS MICROBIOLOGY
- Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters
- (2015) Jeremy J. Barr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Oral Application of T4 Phage Induces Weak Antibody Production in the Gut and in the Blood
- (2015) Joanna Majewska et al. Viruses-Basel
- Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis
- (2015) Nádia Conceição-Neto et al. Scientific Reports
- Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
- (2015) Simon Roux et al. eLife
- Inter-individual differences in the gene content of human gut bacterial species
- (2015) Ana Zhu et al. GENOME BIOLOGY
- Mucin glycan foraging in the human gut microbiome
- (2015) Louise E. Tailford et al. Frontiers in Genetics
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Characterization of virus-like particles associated with the human faecal and caecal microbiota
- (2014) Lesley Hoyles et al. RESEARCH IN MICROBIOLOGY
- Rapid evolution of the human gut virome
- (2013) S. Minot et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
- (2013) A. Reyes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacteriophage adhering to mucus provide a non-host-derived immunity
- (2013) J. J. Barr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads
- (2012) Simon Roux et al. PLoS One
- Enterotypes of the human gut microbiome
- (2011) Manimozhiyan Arumugam et al. NATURE
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- A Catalog of Reference Genomes from the Human Microbiome
- (2010) et al. SCIENCE
- Viral diversity and dynamics in an infant gut
- (2008) Mya Breitbart et al. RESEARCH IN MICROBIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search