标题
The origin of RNA interference: Adaptive or neutral evolution?
作者
关键词
-
出版物
PLOS BIOLOGY
Volume 20, Issue 6, Pages e3001715
出版商
Public Library of Science (PLoS)
发表日期
2022-06-30
DOI
10.1371/journal.pbio.3001715
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Non-adaptive complexity and biochemical function
- (2022) Luca Schulz et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Constructive Neutral Evolution 20 Years Later
- (2021) Sergio A. Muñoz-Gómez et al. JOURNAL OF MOLECULAR EVOLUTION
- A programmable pAgo nuclease with universal guide and target specificity from the mesophilic bacterium Kurthia massiliensis
- (2021) Ekaterina Kropocheva et al. NUCLEIC ACIDS RESEARCH
- Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility
- (2021) Amanda G Charlesworth et al. NUCLEIC ACIDS RESEARCH
- Emergent RNA–RNA interactions can promote stability in a facultative phototrophic endosymbiosis
- (2021) Benjamin H. Jenkins et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The role of purifying selection in the origin and maintenance of complex function
- (2021) Tyler D.P. Brunet et al. STUDIES IN HISTORY AND PHILOSOPHY OF SCIENCE
- Transfer RNA and Origins of RNA Interference
- (2021) Andrey Grigoriev Frontiers in Molecular Biosciences
- Origins and evolving functionalities of tRNA-derived small RNAs
- (2021) Qi Chen et al. TRENDS IN BIOCHEMICAL SCIENCES
- Conserved chromosomal functions of RNA interference
- (2020) Michael J. Gutbrod et al. NATURE REVIEWS GENETICS
- Genome-wide DNA sampling by Ago nuclease from the cyanobacterium Synechococcus elongatus
- (2020) Anna Olina et al. RNA Biology
- The Signal and the Noise: Characteristics of Antisense RNA in Complex Microbial Communities
- (2020) Thomas Yssing Michaelsen et al. mSystems
- Advances in bacterial transcriptome understanding: From overlapping transcription to the excludon concept
- (2020) Alejandro Toledo‐Arana et al. MOLECULAR MICROBIOLOGY
- Taming the Turmoil Within: New Insights on the Containment of Transposable Elements
- (2020) Erin S. Kelleher et al. TRENDS IN GENETICS
- Diverse transposable element landscapes in pathogenic and nonpathogenic yeast models: the value of a comparative perspective
- (2020) Patrick H. Maxwell Mobile DNA
- Abundant expression of maternal siRNAs is a conserved feature of seed development
- (2020) Jeffrey W. Grover et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The origin and rise of complex life: progress requires interdisciplinary integration and hypothesis testing
- (2020) Rachel Wood et al. Interface Focus
- A hydrophobic ratchet entrenches molecular complexes
- (2020) Georg K. A. Hochberg et al. NATURE
- A programmable omnipotent Argonaute nuclease from mesophilic bacteria Kurthia massiliensis
- (2020) Yang Liu et al. NUCLEIC ACIDS RESEARCH
- The genomic basis of Red Queen dynamics during rapid reciprocal host–pathogen coevolution
- (2019) Andrei Papkou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Concepts of the last eukaryotic common ancestor
- (2019) Maureen A. O’Malley et al. Nature Ecology & Evolution
- Physiological roles of antisense RNAs in prokaryotes
- (2019) Maxence Lejars et al. BIOCHIMIE
- Exogenous RNAi mechanisms contribute to transcriptome adaptation by phased siRNA clusters in Paramecium
- (2019) Sivarajan Karunanithi et al. NUCLEIC ACIDS RESEARCH
- Modularity, criticality, and evolvability of a developmental gene regulatory network
- (2019) Berta Verd et al. eLife
- Host–transposon interactions: conflict, cooperation, and cooption
- (2019) Rachel L Cosby et al. GENES & DEVELOPMENT
- Beyond networks: mechanism and process in evo-devo
- (2019) James DiFrisco et al. BIOLOGY & PHILOSOPHY
- RNAi is a critical determinant of centromere evolution in closely related fungi
- (2018) Vikas Yadav et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The CSR-1 endogenous RNAi pathway ensures accurate transcriptional reprogramming during the oocyte-to-embryo transition in Caenorhabditis elegans
- (2018) Christina Fassnacht et al. PLoS Genetics
- The Non-Coding Regulatory RNA Revolution in Archaea
- (2018) Diego Gelsinger et al. Genes
- Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes
- (2018) Fergal M. Waldron et al. PLoS Genetics
- Diverse RNA interference strategies in early-branching metazoans
- (2018) Andrew D. Calcino et al. BMC EVOLUTIONARY BIOLOGY
- Fidelity in RNA-based recognition of transposable elements
- (2018) Ilaria Ugolini et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The Expanded Universe of Prokaryotic Argonaute Proteins
- (2018) Sergei Ryazansky et al. mBio
- QTL mapping of natural variation reveals that the developmental regulator bruno reduces tolerance to P-element transposition in the Drosophila female germline
- (2018) Erin S. Kelleher et al. PLOS BIOLOGY
- Structural Foundations of RNA Silencing by Argonaute
- (2017) Jessica Sheu-Gruttadauria et al. JOURNAL OF MOLECULAR BIOLOGY
- Small RNA-mediated regulation of DNA dosage in the ciliate Oxytricha
- (2017) Jaspreet S. Khurana et al. RNA
- Necessity Is the Mother of Invention: Ciliates, Transposons, and Transgenerational Inheritance
- (2017) Sarah E. Allen et al. TRENDS IN GENETICS
- Does Sequence Conservation Provide Evidence for Biological Function?
- (2017) Seila Omer et al. TRENDS IN MICROBIOLOGY
- Argonaute Utilization for miRNA Silencing Is Determined by Phosphorylation-Dependent Recruitment of LIM-Domain-Containing Proteins
- (2017) Katherine S. Bridge et al. Cell Reports
- Protists and the Wild, Wild West of Gene Expression: New Frontiers, Lawlessness, and Misfits
- (2016) David Roy Smith et al. Annual Review of Microbiology
- Inevitability of Genetic Parasites
- (2016) Jaime Iranzo et al. Genome Biology and Evolution
- A simple physical mechanism enables homeostasis in primitive cells
- (2016) Aaron E. Engelhart et al. Nature Chemistry
- Genetic drift, selection and the evolution of the mutation rate
- (2016) Michael Lynch et al. NATURE REVIEWS GENETICS
- The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic
- (2016) Valérie Cognat et al. NUCLEIC ACIDS RESEARCH
- A bacterial Argonaute with noncanonical guide RNA specificity
- (2016) Emine Kaya et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bugs Are Not to Be Silenced: Small RNA Pathways and Antiviral Responses in Insects
- (2016) Vanesa Mongelli et al. Annual Review of Virology
- Epigenetic regulation of serotype expression antagonizes transcriptome dynamics inParamecium tetraurelia
- (2015) Miriam Cheaib et al. DNA RESEARCH
- Everything flows: A process perspective on life
- (2015) J. Jaeger et al. EMBO REPORTS
- Towards a molecular understanding of microRNA-mediated gene silencing
- (2015) Stefanie Jonas et al. NATURE REVIEWS GENETICS
- What's in a genome? The C-value enigma and the evolution of eukaryotic genome content
- (2015) Tyler A. Elliott et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- An ancestral bacterial division system is widespread in eukaryotic mitochondria
- (2015) Michelle M. Leger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mechanistic links between cellular trade-offs, gene expression, and growth
- (2015) Andrea Y. Weiße et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNAi and Heterochromatin Assembly
- (2015) Robert Martienssen et al. Cold Spring Harbor Perspectives in Biology
- Endogenous siRNAs: regulators of internal affairs
- (2014) Monica J. Piatek et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Prolegomenon to patterns in evolution
- (2014) Stuart A. Kauffman BIOSYSTEMS
- Renaissance of mammalian endogenous RNAi
- (2014) Petr Svoboda FEBS LETTERS
- Bioattractors: dynamical systems theory and the evolution of regulatory processes
- (2014) Johannes Jaeger et al. JOURNAL OF PHYSIOLOGY-LONDON
- R-loops induce repressive chromatin marks over mammalian gene terminators
- (2014) Konstantina Skourti-Stathaki et al. NATURE
- RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
- (2014) Marjori A. Matzke et al. NATURE REVIEWS GENETICS
- The evolutionary journey of Argonaute proteins
- (2014) Daan C Swarts et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Search for MicroRNAs Expressed by Intracellular Bacterial Pathogens in Infected Mammalian Cells
- (2014) Yuki Furuse et al. PLoS One
- Genomic Characterization of Variable Surface Antigens Reveals a Telomere Position Effect as a Prerequisite for RNA Interference-Mediated Silencing in Paramecium tetraurelia
- (2014) Damir Baranasic et al. mBio
- Genome reduction as the dominant mode of evolution
- (2013) Yuri I. Wolf et al. BIOESSAYS
- Untangling the web: The diverse functions of the PIWI/piRNA pathway
- (2013) Sneha Ramesh Mani et al. MOLECULAR REPRODUCTION AND DEVELOPMENT
- Animals in a bacterial world, a new imperative for the life sciences
- (2013) Margaret McFall-Ngai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mechanisms of Mitochondrial Fission and Fusion
- (2013) A. M. van der Bliek et al. Cold Spring Harbor Perspectives in Biology
- Transposon Domestication versus Mutualism in Ciliate Genome Rearrangements
- (2013) Alexander Vogt et al. PLoS Genetics
- Constructive neutral evolution: exploring evolutionary theory’s curious disconnect
- (2012) Arlin Stoltzfus Biology Direct
- Piwi-Interacting RNAs Protect DNA against Loss during Oxytricha Genome Rearrangement
- (2012) Wenwen Fang et al. CELL
- The Inheritance of Process: A Dynamical Systems Approach
- (2012) Johannes Jaeger et al. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION
- RNAi triggered by specialized machinery silences developmental genes and retrotransposons
- (2012) Soichiro Yamanaka et al. NATURE
- Transposable elements domesticated and neofunctionalized by eukaryotic genomes
- (2012) Ahmed M. Alzohairy et al. PLASMID
- Transposable Elements, Epigenetics, and Genome Evolution
- (2012) N. V. Fedoroff SCIENCE
- The Repatterning of Eukaryotic Genomes by Random Genetic Drift
- (2011) Michael Lynch et al. Annual Review of Genomics and Human Genetics
- From snoRNA to miRNA: Dual function regulatory non-coding RNAs
- (2011) Michelle S. Scott et al. BIOCHIMIE
- How a neutral evolutionary ratchet can build cellular complexity
- (2011) Julius Lukeš et al. IUBMB LIFE
- Genome-wide antisense transcription drives mRNA processing in bacteria
- (2011) I. Lasa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative Functional Genomics of the Fission Yeasts
- (2011) N. Rhind et al. SCIENCE
- Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution
- (2010) Thomas Cavalier-Smith Biology Direct
- RNAi-dependent formation of heterochromatin and its diverse functions
- (2010) Shiv IS Grewal CURRENT OPINION IN GENETICS & DEVELOPMENT
- Diverse Pathways Generate MicroRNA-like RNAs and Dicer-Independent Small Interfering RNAs in Fungi
- (2010) Heng-Chi Lee et al. MOLECULAR CELL
- Messy biology and the origins of evolutionary innovations
- (2010) Dan S Tawfik Nature Chemical Biology
- RNAi and heterochromatin repress centromeric meiotic recombination
- (2010) C. Ellermeier et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Irremediable Complexity?
- (2010) M. W. Gray et al. SCIENCE
- The Argonaute CSR-1 and Its 22G-RNA Cofactors Are Required for Holocentric Chromosome Segregation
- (2009) Julie M. Claycomb et al. CELL
- Major Evolutionary Transitions in Centromere Complexity
- (2009) Harmit S. Malik et al. CELL
- Deletional Bias across the Three Domains of Life
- (2009) Chih-Horng Kuo et al. Genome Biology and Evolution
- Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
- (2009) J. Lu et al. GENOME RESEARCH
- Distinct Argonaute-Mediated 22G-RNA Pathways Direct Genome Surveillance in the C. elegans Germline
- (2009) Weifeng Gu et al. MOLECULAR CELL
- Small silencing RNAs: an expanding universe
- (2009) Megha Ghildiyal et al. NATURE REVIEWS GENETICS
- Small RNAs derived from snoRNAs
- (2009) R. J. Taft et al. RNA
- RNAi in Budding Yeast
- (2009) I. A. Drinnenberg et al. SCIENCE
- Antigenic variation in Giardia lamblia is regulated by RNA interference
- (2008) César G. Prucca et al. NATURE
- The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs
- (2008) Katsutomo Okamura et al. NATURE
- Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
- (2008) Toshiaki Watanabe et al. NATURE
- Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
- (2008) Oliver H. Tam et al. NATURE
- An endogenous small interfering RNA pathway in Drosophila
- (2008) Benjamin Czech et al. NATURE
- The intelligent clock and the Rube Goldberg clock
- (2008) Aziz Sancar NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Endogenous siRNAs Derived from Transposons and mRNAs in Drosophila Somatic Cells
- (2008) M. Ghildiyal et al. SCIENCE
- Origins and evolution of eukaryotic RNA interference
- (2008) S SHABALINA et al. TRENDS IN ECOLOGY & EVOLUTION
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started