标题
Abundant expression of maternal siRNAs is a conserved feature of seed development
作者
关键词
-
出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 117, Issue 26, Pages 15305-15315
出版商
Proceedings of the National Academy of Sciences
发表日期
2020-06-16
DOI
10.1073/pnas.2001332117
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Maternal small RNAs mediate spatial-temporal regulation of gene expression, imprinting, and seed development in Arabidopsis
- (2019) Ryan C. Kirkbride et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Meiocyte-Specific and AtSPO11-1–Dependent Small RNAs and Their Association with Meiotic Gene Expression and Recombination
- (2019) Jiyue Huang et al. PLANT CELL
- Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10- to 17-Nucleotide “Tiny” RNAs
- (2019) Patricia Baldrich et al. PLANT CELL
- Paternally acting canonical RNA-directed DNA methylation pathway genes sensitize Arabidopsis endosperm to paternal genome dosage
- (2019) P.R. V. Satyaki et al. PLANT CELL
- Reaction Mechanisms of Pol IV, RDR2, and DCL3 Drive RNA Channeling in the siRNA-Directed DNA Methylation Pathway
- (2019) Jasleen Singh et al. MOLECULAR CELL
- Paternal easiRNAs regulate parental genome dosage in Arabidopsis
- (2018) German Martinez et al. NATURE GENETICS
- Maternal components of RNA-directed DNA methylation are required for seed development in Brassica rapa
- (2018) Jeffrey W. Grover et al. PLANT JOURNAL
- EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum
- (2018) Seijiro Ono et al. PLoS Genetics
- Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis
- (2017) James Walker et al. NATURE GENETICS
- Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
- (2017) Ioanna Kalvari et al. NUCLEIC ACIDS RESEARCH
- Widespread Contamination of Arabidopsis Embryo and Endosperm Transcriptome Data Sets
- (2017) Michael A. Schon et al. PLANT CELL
- AGO4 is specifically required for heterochromatic siRNA accumulation at Pol V-dependent loci inArabidopsis thaliana
- (2017) Feng Wang et al. PLANT JOURNAL
- A Small RNA Pathway Mediates Allelic Dosage in Endosperm
- (2017) Robert M. Erdmann et al. Cell Reports
- piRNA biogenesis in the germline: From transcription of piRNA genomic sources to piRNA maturation
- (2016) Shigeki Hirakata et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Evidence for ARGONAUTE4–DNA interactions in RNA-directed DNA methylation in plants
- (2016) Sylvie Lahmy et al. GENES & DEVELOPMENT
- PIWI-Interacting RNA: Its Biogenesis and Functions
- (2015) Yuka W. Iwasaki et al. Annual Review of Biochemistry
- A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis
- (2015) Jixian Zhai et al. CELL
- The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome
- (2015) Tanya Z. Berardini et al. GENESIS
- SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand
- (2015) Haibao Tang et al. Genome Biology and Evolution
- MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing
- (2015) Mark A Urich et al. Nature Protocols
- The Complexity of Posttranscriptional Small RNA Regulatory Networks Revealed by In Silico Analysis of Gossypium arboreum L. Leaf, Flower and Boll Small Regulatory RNAs
- (2015) Hongtao Hu et al. PLoS One
- Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis
- (2015) Todd Blevins et al. eLife
- Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange
- (2014) Yuanlong Liu et al. BMC GENOMICS
- RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
- (2014) Marjori A. Matzke et al. NATURE REVIEWS GENETICS
- Protocol: a beginner’s guide to the analysis of RNA-directed DNA methylation in plants
- (2014) Huiming Zhang et al. Plant Methods
- Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting
- (2014) Daniela Pignatta et al. eLife
- The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin
- (2013) Assaf Zemach et al. CELL
- Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome
- (2013) Hume Stroud et al. CELL
- The Norway spruce genome sequence and conifer genome evolution
- (2013) Björn Nystedt et al. NATURE
- Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
- (2013) Julie A. Law et al. NATURE
- Deciphering the Diploid Ancestral Genome of the MesohexaploidBrassica rapa
- (2013) Feng Cheng et al. PLANT CELL
- Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm
- (2013) J. A. Rodrigues et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ShortStack: Comprehensive annotation and quantification of small RNA genes
- (2013) M. J. Axtell RNA
- ArabidopsisArgonaute MID domains use their nucleotide specificity loop to sort small RNAs
- (2012) Filipp Frank et al. EMBO JOURNAL
- Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds
- (2012) J. Lu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Maternal Epigenetic Pathways Control Parental Contributions to Arabidopsis Early Embryogenesis
- (2011) Daphné Autran et al. CELL
- The genome of the mesopolyploid crop species Brassica rapa
- (2011) Xiaowu Wang et al. NATURE GENETICS
- An Atypical Epigenetic Mechanism Affects Uniparental Expression of Pol IV-Dependent siRNAs
- (2011) Rebecca A. Mosher et al. PLoS One
- Drosophila CENH3 Is Sufficient for Centromere Formation
- (2011) M. J. Mendiburo et al. SCIENCE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- Maternal control of Pol IV-dependent siRNAs in Arabidopsis endosperm
- (2010) Rebecca A. Mosher NEW PHYTOLOGIST
- The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci
- (2010) E. R. Havecker et al. PLANT CELL
- Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana
- (2010) M. A. Beilstein et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen
- (2009) R. Keith Slotkin et al. CELL
- Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis
- (2009) Rebecca A. Mosher et al. NATURE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide
- (2008) Shijun Mi et al. CELL
- PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
- (2008) R. A. Mosher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing
- (2008) J. Brennecke et al. SCIENCE
- The Value of Nonmodel Genomes and an Example Using SynMap Within CoGe to Dissect the Hexaploidy that Predates the Rosids
- (2008) Eric Lyons et al. Tropical Plant Biology
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