Vertex protein PduN tunes encapsulated pathway performance by dictating bacterial metabolosome morphology

Computational and Experimental Approaches to Controlling Bacterial Microcompartment Assembly

(2021) Yaohua Li et al.   ACS Central Science

Introducing noncanonical amino acids for studying and engineering bacterial microcompartments

(2021) Hao Chen et al.   CURRENT OPINION IN MICROBIOLOGY

A catalog of the diversity and ubiquity of bacterial microcompartments

(2021) Markus Sutter et al.   Nature Communications

Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper

(2021) Alexander G McFarland et al.   BIOINFORMATICS

Bacterial microcompartments and their role in pathogenicity

(2021) Michael B Prentice   CURRENT OPINION IN MICROBIOLOGY

Bacterial microcompartments: tiny organelles with big potential

(2021) Nolan W Kennedy et al.   CURRENT OPINION IN MICROBIOLOGY

Genetic characterization of a glycyl radical microcompartment used for 1,2-propanediol fermentation by uropathogenic Escherichia coli CFT073

(2020) Alex P. Lundin et al.   JOURNAL OF BACTERIOLOGY

SciPy 1.0: fundamental algorithms for scientific computing in Python

(2020) Pauli Virtanen et al.   NATURE METHODS

A genomic integration platform for heterologous cargo encapsulation in 1,2-propanediol utilization bacterial microcompartments

(2020) Taylor M. Nichols et al.   BIOCHEMICAL ENGINEERING JOURNAL

Apparent size and morphology of bacterial microcompartments varies with technique

(2020) Nolan W. Kennedy et al.   PLoS One

Decoding the stoichiometric composition and organisation of bacterial metabolosomes

(2020) Mengru Yang et al.   Nature Communications

Self-assembling Shell Proteins PduA and PduJ have Essential and Redundant Roles in Bacterial Microcompartment Assembly

(2020) Nolan W. Kennedy et al.   JOURNAL OF MOLECULAR BIOLOGY

Structural Characterization of a Synthetic Tandem-Domain Bacterial Microcompartment Shell Protein Capable of Forming Icosahedral Shell Assemblies

(2019) Markus Sutter et al.   ACS Synthetic Biology

The Plasticity of Molecular Interactions Governs Bacterial Microcompartment Shell Assembly

(2019) Basil J. Greber et al.   STRUCTURE

A designed bacterial microcompartment shell with tunable composition and precision cargo loading

(2019) Bryan Ferlez et al.   METABOLIC ENGINEERING

Bacterial Microcompartment-Dependent 1,2-Propanediol Utilization Stimulates Anaerobic Growth of Listeria monocytogenes EGDe

(2019) Zhe Zeng et al.   Frontiers in Microbiology

A Bacterial Microcompartment Is Used for Choline Fermentation by Escherichia coli 536

(2018) Taylor I. Herring et al.   JOURNAL OF BACTERIOLOGY

Bacterial microcompartments

(2018) Cheryl A. Kerfeld et al.   NATURE REVIEWS MICROBIOLOGY

A Generic Self-Assembly Process in Microcompartments and Synthetic Protein Nanotubes

(2018) Ismail Uddin et al.   Small

Quantitative characterization of all single amino acid variants of a viral capsid-based drug delivery vehicle

(2018) Emily C. Hartman et al.   Nature Communications

Programmed loading and rapid purification of engineered bacterial microcompartment shells

(2018) Andrew Hagen et al.   Nature Communications

Structural absorption by barbule microstructures of super black bird of paradise feathers

(2018) Dakota E. McCoy et al.   Nature Communications

Spatially organizing biochemistry: choosing a strategy to translate synthetic biology to the factory

(2018) Christopher M. Jakobson et al.   Scientific Reports

In Vitro Assembly of Diverse Bacterial Microcompartment Shell Architectures

(2018) Andrew R. Hagen et al.   NANO LETTERS

De novo design of signal sequences to localize cargo to the 1,2-propanediol utilization microcompartment

(2017) Christopher M. Jakobson et al.   PROTEIN SCIENCE

Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell

(2017) Markus Sutter et al.   SCIENCE

Construction of Recombinant Pdu Metabolosome Shells for Small Molecule Production in Corynebacterium glutamicum

(2017) Isabel Huber et al.   ACS Synthetic Biology

Evidence for Improved Encapsulated Pathway Behavior in a Bacterial Microcompartment through Shell Protein Engineering

(2017) Marilyn F. Slininger Lee et al.   ACS Synthetic Biology

A systems-level model reveals that 1,2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration

(2017) Christopher M. Jakobson et al.   PLoS Computational Biology

In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment

(2017) Jan Zarzycki et al.   Scientific Reports

A Complete Structural Inventory of the Mycobacterial Microcompartment Shell Proteins Constrains Models of Global Architecture and Transport

(2016) Evan Mallette et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Expanding the genetic code of Salmonella with non-canonical amino acids

(2016) Qinglei Gan et al.   Scientific Reports

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Selective molecular transport through the protein shell of a bacterial microcompartment organelle

(2015) Chiranjit Chowdhury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of particle size, shape, and stiffness in design of intravascular drug delivery systems: insights from computations, experiments, and nature

(2015) Anirban Sen Gupta   Wiley Interdisciplinary Reviews-Nanomedicine and Nanobiotechnology

Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function

(2014) Jonathan K. Lassila et al.   JOURNAL OF MOLECULAR BIOLOGY

Diverse Bacterial Microcompartment Organelles

(2014) C. Chowdhury et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Interactions and structural variability of β-carboxysomal shell protein CcmL

(2014) Thomas J. Keeling et al.   PHOTOSYNTHESIS RESEARCH

Engineering Transcriptional Regulation to Control Pdu Microcompartment Formation

(2014) Edward Y. Kim et al.   PLoS One

A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method

(2014) Seth D. Axen et al.   PLoS Computational Biology

A rapid flow cytometry assay for the relative quantification of protein encapsulation into bacterial microcompartments

(2013) Edward Y. Kim et al.   Biotechnology Journal

Biogenesis of a Bacterial Organelle: The Carboxysome Assembly Pathway

(2013) Jeffrey C. Cameron et al.   CELL

Shape-Controlled Nanostructures in Heterogeneous Catalysis

(2013) Francisco Zaera   ChemSusChem

Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species

(2013) Markus Sutter et al.   PHOTOSYNTHESIS RESEARCH

Bacterial microcompartment shells of diverse functional types possess pentameric vertex proteins

(2013) Nicole M. Wheatley et al.   PROTEIN SCIENCE

The PduM Protein Is a Structural Component of the Microcompartments Involved in Coenzyme B12-Dependent 1,2-Propanediol Degradation by Salmonella enterica

(2012) S. Sinha et al.   JOURNAL OF BACTERIOLOGY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Structure of PduT, a trimeric bacterial microcompartment protein with a 4Fe–4S cluster-binding site

(2011) Allan Pang et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The N-Terminal Region of the Medium Subunit (PduD) Packages Adenosylcobalamin-Dependent Diol Dehydratase (PduCDE) into the Pdu Microcompartment

(2011) C. Fan et al.   JOURNAL OF BACTERIOLOGY

Genetic Analysis of the Protein Shell of the Microcompartments Involved in Coenzyme B12-Dependent 1,2-Propanediol Degradation by Salmonella

(2011) S. Cheng et al.   JOURNAL OF BACTERIOLOGY

Carboxysomes: cyanobacterial RubisCO comes in small packages

(2011) George S. Espie et al.   PHOTOSYNTHESIS RESEARCH

Experimental illumination of a fitness landscape

(2011) R. T. Hietpas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Insight into the Mechanisms of Transport across theSalmonella entericaPdu Microcompartment Shell

(2010) Christopher S. Crowley et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Synthesis of Empty Bacterial Microcompartments, Directed Organelle Protein Incorporation, and Evidence of Filament-Associated Organelle Movement

(2010) Joshua B. Parsons et al.   MOLECULAR CELL

Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli

(2010) S. Tanaka et al.   SCIENCE

Golden Gate Shuffling: A One-Pot DNA Shuffling Method Based on Type IIs Restriction Enzymes

(2009) Carola Engler et al.   PLoS One

The Pentameric Vertex Proteins Are Necessary for the Icosahedral Carboxysome Shell to Function as a CO2 Leakage Barrier

(2009) Fei Cai et al.   PLoS One

Microcompartments for B12-Dependent 1,2-Propanediol Degradation Provide Protection from DNA and Cellular Damage by a Reactive Metabolic Intermediate

(2008) E. M. Sampson et al.   JOURNAL OF BACTERIOLOGY

Structure of the PduU Shell Protein from the Pdu Microcompartment of Salmonella

(2008) Christopher S. Crowley et al.   STRUCTURE