标题
A catalog of the diversity and ubiquity of bacterial microcompartments
作者
关键词
-
出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-06-21
DOI
10.1038/s41467-021-24126-4
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A Survey of Bacterial Microcompartment Distribution in the Human Microbiome
- (2021) Kunica Asija et al. Frontiers in Microbiology
- Encapsulation mechanisms and structural studies of GRM2 bacterial microcompartment particles
- (2020) Gints Kalnins et al. Nature Communications
- Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan
- (2020) Andreas Sichert et al. Nature Microbiology
- Engineered bacterial microcompartments: apps for programming metabolism
- (2020) Cheryl A Kerfeld et al. CURRENT OPINION IN BIOTECHNOLOGY
- Characterization of sponge‐associated Verrucomicrobia : microcompartment‐based sugar utilization and enhanced toxin–antitoxin modules as features of host‐associated Opitutales
- (2020) Sofia Sizikov et al. ENVIRONMENTAL MICROBIOLOGY
- Glycyl Radical Enzyme-Associated Microcompartments: Redox-Replete Bacterial Organelles
- (2019) Bryan Ferlez et al. mBio
- The Plasticity of Molecular Interactions Governs Bacterial Microcompartment Shell Assembly
- (2019) Basil J. Greber et al. STRUCTURE
- RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
- (2019) Alexey M Kozlov et al. BIOINFORMATICS
- ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
- (2019) Diego Darriba et al. MOLECULAR BIOLOGY AND EVOLUTION
- Structure of a synthetic beta-carboxysome shell
- (2019) Markus Sutter et al. PLANT PHYSIOLOGY
- Bacterial microcompartments: catalysis-enhancing metabolic modules for next generation metabolic and biomedical engineering
- (2019) Henning Kirst et al. BMC BIOLOGY
- Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life
- (2018) Cindy J. Castelle et al. CELL
- Bacterial microcompartments
- (2018) Cheryl A. Kerfeld et al. NATURE REVIEWS MICROBIOLOGY
- SWISS-MODEL: homology modelling of protein structures and complexes
- (2018) Andrew Waterhouse et al. NUCLEIC ACIDS RESEARCH
- Heterohexamers Formed by CcmK3 and CcmK4 Increase the Complexity of Beta Carboxysome Shells
- (2018) Manuel Sommer et al. PLANT PHYSIOLOGY
- Crystal structures of β-carboxysome shell protein CcmP: ligand binding correlates with the closed or open central pore
- (2017) Anna M Larsson et al. JOURNAL OF EXPERIMENTAL BOTANY
- β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints
- (2017) Manuel Sommer et al. JOURNAL OF EXPERIMENTAL BOTANY
- MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
- (2017) Martin Steinegger et al. NATURE BIOTECHNOLOGY
- Embracing the unknown: disentangling the complexities of the soil microbiome
- (2017) Noah Fierer NATURE REVIEWS MICROBIOLOGY
- Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell
- (2017) Markus Sutter et al. SCIENCE
- Evidence for Improved Encapsulated Pathway Behavior in a Bacterial Microcompartment through Shell Protein Engineering
- (2017) Marilyn F. Slininger Lee et al. ACS Synthetic Biology
- Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
- (2017) Feiqiao Brian Yu et al. eLife
- Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees
- (2016) Kazunori D. Yamada et al. BIOINFORMATICS
- A simple method to control over-alignment in the MAFFT multiple sequence alignment program
- (2016) Kazutaka Katoh et al. BIOINFORMATICS
- Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation
- (2016) Yu Xia et al. Biotechnology for Biofuels
- Structure and Function of a Bacterial Microcompartment Shell Protein Engineered to Bind a [4Fe-4S] Cluster
- (2016) Clément Aussignargues et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
- (2016) Emiley A. Eloe-Fadrosh et al. Nature Communications
- The Structural Basis of Coenzyme A Recycling in a Bacterial Organelle
- (2016) Onur Erbilgin et al. PLOS BIOLOGY
- Bioinformatic Characterization of Glycyl Radical Enzyme-Associated Bacterial Microcompartments
- (2015) Jan Zarzycki et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- In Salmonella enterica, Ethanolamine Utilization Is Repressed by 1,2-Propanediol To Prevent Detrimental Mixing of Components of Two Different Bacterial Microcompartments
- (2015) Ryan Sturms et al. JOURNAL OF BACTERIOLOGY
- Urinary tract infections: epidemiology, mechanisms of infection and treatment options
- (2015) Ana L. Flores-Mireles et al. NATURE REVIEWS MICROBIOLOGY
- Bacterial microcompartments and the modular construction of microbial metabolism
- (2015) Cheryl A. Kerfeld et al. TRENDS IN MICROBIOLOGY
- Characterization of a Planctomycetal Organelle: a Novel Bacterial Microcompartment for the Aerobic Degradation of Plant Saccharides
- (2014) Onur Erbilgin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Engineering Bacterial Microcompartment Shells: Chimeric Shell Proteins and Chimeric Carboxysome Shells
- (2014) Fei Cai et al. ACS Synthetic Biology
- A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
- (2014) Seth D. Axen et al. PLoS Computational Biology
- Thermoanaerobaculum aquaticum gen. nov., sp. nov., the first cultivated member of Acidobacteria subdivision 23, isolated from a hot spring
- (2013) N. A. Losey et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment
- (2013) Fei Cai et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Elucidating Essential Role of Conserved Carboxysomal Protein CcmN Reveals Common Feature of Bacterial Microcompartment Assembly
- (2012) James N. Kinney et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Bacterial microcompartments moving into a synthetic biological world
- (2012) Stefanie Frank et al. JOURNAL OF BIOTECHNOLOGY
- Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria
- (2012) Julien Jorda et al. PROTEIN SCIENCE
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- Identification and Structural Analysis of a Novel Carboxysome Shell Protein with Implications for Metabolite Transport
- (2009) Michael G. Klein et al. JOURNAL OF MOLECULAR BIOLOGY
- Atomic-Level Models of the Bacterial Carboxysome Shell
- (2008) S. Tanaka et al. SCIENCE
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