Core transcription programs controlling injury-induced neurodegeneration of retinal ganglion cells
出版年份 2022 全文链接
标题
Core transcription programs controlling injury-induced neurodegeneration of retinal ganglion cells
作者
关键词
-
出版物
NEURON
Volume 110, Issue 16, Pages 2607-2624.e8
出版商
Elsevier BV
发表日期
2022-06-29
DOI
10.1016/j.neuron.2022.06.003
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Central nervous system regeneration
- (2022) Supraja G. Varadarajan et al. CELL
- p53 is a central regulator driving neurodegeneration caused by C9orf72 poly(PR)
- (2021) Maya Maor-Nof et al. CELL
- Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
- (2021) Puya Gharahkhani et al. Nature Communications
- Twelve years of SAMtools and BCFtools
- (2021) Petr Danecek et al. GigaScience
- An anterograde pathway for sensory axon degeneration gated by a cytoplasmic action of the transcriptional regulator P53
- (2021) David J. Simon et al. DEVELOPMENTAL CELL
- Preservation of vision after CaMKII-mediated protection of retinal ganglion cells
- (2021) Xinzheng Guo et al. CELL
- Axon Regeneration: A Subcellular Extension in Multiple Dimensions
- (2021) Carla C. Winter et al. Cold Spring Harbor Perspectives in Biology
- Topoisomerase I inhibition and peripheral nerve injury induce DNA breaks and ATF3-associated axon regeneration in sensory neurons
- (2021) Yung-Chih Cheng et al. Cell Reports
- The drug adaptaquin blocks ATF4/CHOP-dependent pro-death Trib3 induction and protects in cellular and mouse models of Parkinson's disease
- (2020) Pascaline Aimé et al. NEUROBIOLOGY OF DISEASE
- Genome-wide In Vivo CNS Screening Identifies Genes that Modify CNS Neuronal Survival and mHTT Toxicity
- (2020) Mary H. Wertz et al. NEURON
- Chromatin accessibility dynamics in a model of human forebrain development
- (2020) Alexandro E. Trevino et al. SCIENCE
- Mouse γ-Synuclein Promoter-Mediated Gene Expression and Editing in Mammalian Retinal Ganglion Cells
- (2020) Qizhao Wang et al. JOURNAL OF NEUROSCIENCE
- Global reference mapping of human transcription factor footprints
- (2020) Jeff Vierstra et al. NATURE
- CRISPR-based functional genomics for neurological disease
- (2020) Martin Kampmann Nature Reviews Neurology
- Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation
- (2020) Hyeseung Lee et al. NEURON
- Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases
- (2020) M. Ryan Corces et al. NATURE GENETICS
- Transcriptional Reprogramming of Distinct Peripheral Sensory Neuron Subtypes after Axonal Injury
- (2020) William Renthal et al. NEURON
- ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation
- (2020) Mette Bentsen et al. Nature Communications
- Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types
- (2020) Cory C. Funk et al. Cell Reports
- Axon Regeneration in the Mammalian Optic Nerve
- (2020) Philip R. Williams et al. Annual Review of Vision Science
- GENCODE 2021
- (2020) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
- In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes
- (2020) Xin Jin et al. SCIENCE
- Chromatin accessibility and the regulatory epigenome
- (2019) Sandy L. Klemm et al. NATURE REVIEWS GENETICS
- Elevating Growth Factor Responsiveness and Axon Regeneration by Modulating Presynaptic Inputs
- (2019) Yiling Zhang et al. NEURON
- A Unifying Hypothesis for Alzheimer’s Disease: From Plaques to Neurodegeneration
- (2019) Frances A. Edwards TRENDS IN NEUROSCIENCES
- Axon injury signaling and compartmentalized injury response in glaucoma
- (2019) Stephanie B. Syc-Mazurek et al. PROGRESS IN RETINAL AND EYE RESEARCH
- The ENCODE Blacklist: Identification of Problematic Regions of the Genome
- (2019) Haley M. Amemiya et al. Scientific Reports
- Epigenomic signatures underpin the axonal regenerative ability of dorsal root ganglia sensory neurons
- (2019) Ilaria Palmisano et al. NATURE NEUROSCIENCE
- Stress-induced phospho-ubiquitin formation causes parkin degradation
- (2019) Lyudmila Kovalchuke et al. Scientific Reports
- Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes
- (2019) Nicholas M. Tran et al. NEURON
- The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis
- (2018) Luis de la Torre-Ubieta et al. CELL
- The challenge of regenerative therapies for the optic nerve in glaucoma
- (2017) David J. Calkins et al. EXPERIMENTAL EYE RESEARCH
- Genetics of glaucoma
- (2017) Janey L. Wiggs et al. HUMAN MOLECULAR GENETICS
- Reactive Astrocytes: Production, Function, and Therapeutic Potential
- (2017) Shane A. Liddelow et al. IMMUNITY
- Together JUN and DDIT3 (CHOP) control retinal ganglion cell death after axonal injury
- (2017) Stephanie B. Syc-Mazurek et al. Molecular Neurodegeneration
- chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
- (2017) Alicia N Schep et al. NATURE METHODS
- An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
- (2017) M Ryan Corces et al. NATURE METHODS
- Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell
- (2017) Yi-Rong Peng et al. NEURON
- Sox11 Expression Promotes Regeneration of Some Retinal Ganglion Cell Types but Kills Others
- (2017) Michael W. Norsworthy et al. NEURON
- Surviving Stress: Modulation of ATF4-Mediated Stress Responses in Normal and Malignant Cells
- (2017) Inge M.N. Wortel et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Neuroprotection in Glaucoma: Animal Models and Clinical Trials
- (2017) Mohammadali Almasieh et al. Annual Review of Vision Science
- TFBSTools: an R/bioconductor package for transcription factor binding site analysis
- (2016) Ge Tan et al. BIOINFORMATICS
- Complex heatmaps reveal patterns and correlations in multidimensional genomic data
- (2016) Zuguang Gu et al. BIOINFORMATICS
- Restoration of Visual Function by Enhancing Conduction in Regenerated Axons
- (2016) Fengfeng Bei et al. CELL
- A Systems-Level Analysis of the Peripheral Nerve Intrinsic Axonal Growth Program
- (2016) Vijayendran Chandran et al. NEURON
- Intrinsic Control of Axon Regeneration
- (2016) Zhigang He et al. NEURON
- Therapeutic targeting of oxygen-sensing prolyl hydroxylases abrogates ATF4-dependent neuronal death and improves outcomes after brain hemorrhage in several rodent models
- (2016) Saravanan S. Karuppagounder et al. Science Translational Medicine
- Primary open-angle glaucoma
- (2016) Robert N. Weinreb et al. Nature Reviews Disease Primers
- Understanding Glaucomatous Optic Neuropathy: The Synergy Between Clinical Observation and Investigation
- (2016) Harry A. Quigley Annual Review of Vision Science
- ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
- (2015) Guangchuang Yu et al. BIOINFORMATICS
- Chromatin and RNA Maps Reveal Regulatory Long Noncoding RNAs in Mouse
- (2015) Gireesh K. Bogu et al. MOLECULAR AND CELLULAR BIOLOGY
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders
- (2015) Neelroop N. Parikshak et al. NATURE REVIEWS GENETICS
- High-throughput functional genomics using CRISPR–Cas9
- (2015) Ophir Shalem et al. NATURE REVIEWS GENETICS
- Doublecortin-Like Kinases Promote Neuronal Survival and Induce Growth Cone Reformation via Distinct Mechanisms
- (2015) Homaira Nawabi et al. NEURON
- Neuroinflammation triggered by β-glucan/dectin-1 signaling enables CNS axon regeneration
- (2015) Katherine T. Baldwin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- circlize implements and enhances circular visualization in R
- (2014) Zuguang Gu et al. BIOINFORMATICS
- iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging
- (2014) Nicolas Renier et al. CELL
- CRISPR-Cas9 Knockin Mice for Genome Editing and Cancer Modeling
- (2014) Randall J. Platt et al. CELL
- The Pathophysiology and Treatment of Glaucoma
- (2014) Robert N. Weinreb et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9
- (2014) Lukasz Swiech et al. NATURE BIOTECHNOLOGY
- PCAF-dependent epigenetic changes promote axonal regeneration in the central nervous system
- (2014) Radhika Puttagunta et al. Nature Communications
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Epigenetic Regulation of Sensory Axon Regeneration after Spinal Cord Injury
- (2013) M. J. Finelli et al. JOURNAL OF NEUROSCIENCE
- ATF4 Protects Against Neuronal Death in Cellular Parkinson's Disease Models by Maintaining Levels of Parkin
- (2013) X. Sun et al. JOURNAL OF NEUROSCIENCE
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Networks of bZIP Protein-Protein Interactions Diversified Over a Billion Years of Evolution
- (2013) A. W. Reinke et al. SCIENCE
- RNA-Guided Human Genome Engineering via Cas9
- (2013) P. Mali et al. SCIENCE
- Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells
- (2013) Ophir Shalem et al. SCIENCE
- Multiplex Genome Engineering Using CRISPR/Cas Systems
- (2013) L. Cong et al. SCIENCE
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- Pharmacological brake-release of mRNA translation enhances cognitive memory
- (2013) Carmela Sidrauski et al. eLife
- Under Pressure: Cellular and Molecular Responses During Glaucoma, a Common Neurodegeneration with Axonopathy
- (2012) Robert W. Nickells et al. Annual Review of Neuroscience
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Removing technical variability in RNA-seq data using conditional quantile normalization
- (2012) K. D. Hansen et al. BIOSTATISTICS
- Intrinsic axonal degeneration pathways are critical for glaucomatous damage
- (2012) Gareth R. Howell et al. EXPERIMENTAL NEUROLOGY
- Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
- (2012) Caryn S. Ross-Innes et al. NATURE
- A map of the cis-regulatory sequences in the mouse genome
- (2012) Yin Shen et al. NATURE
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Transcription factors: from enhancer binding to developmental control
- (2012) François Spitz et al. NATURE REVIEWS GENETICS
- Differential Effects of Unfolded Protein Response Pathways on Axon Injury-Induced Death of Retinal Ganglion Cells
- (2012) Yang Hu et al. NEURON
- Functional Significance of Isoform Diversification in the Protocadherin Gamma Gene Cluster
- (2012) Weisheng V. Chen et al. NEURON
- Neuronal clustering and fasciculation phenotype in Dscam- and Bax-deficient mouse retinas
- (2011) Patrick W. Keeley et al. JOURNAL OF COMPARATIVE NEUROLOGY
- Sustained axon regeneration induced by co-deletion of PTEN and SOCS3
- (2011) Fang Sun et al. NATURE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- HDAC inhibition promotes neuronal outgrowth and counteracts growth cone collapse through CBP/p300 and P/CAF-dependent p53 acetylation
- (2010) P Gaub et al. CELL DEATH AND DIFFERENTIATION
- Differential susceptibility to experimental glaucoma among 3 mouse strains using bead and viscoelastic injection
- (2010) Frances E. Cone et al. EXPERIMENTAL EYE RESEARCH
- Retrograde axonal transport: pathways to cell death?
- (2010) Eran Perlson et al. TRENDS IN NEUROSCIENCES
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- A Role of DNA-PK for the Metabolic Gene Regulation in Response to Insulin
- (2009) Roger H.F. Wong et al. CELL
- Neuroscience in the era of functional genomics and systems biology
- (2009) Daniel H. Geschwind et al. NATURE
- SOCS3 Deletion Promotes Optic Nerve Regeneration In Vivo
- (2009) Patrice D. Smith et al. NEURON
- KLF Family Members Regulate Intrinsic Axon Regeneration Ability
- (2009) D. L. Moore et al. SCIENCE
- TFCat: the curated catalog of mouse and human transcription factors
- (2009) Debra L Fulton et al. GENOME BIOLOGY
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- Promoting Axon Regeneration in the Adult CNS by Modulation of the PTEN/mTOR Pathway
- (2008) K. K. Park et al. SCIENCE
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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