Yeast PI31 inhibits the proteasome by a direct multisite mechanism

Structures of chaperone-associated assembly intermediates reveal coordinated mechanisms of proteasome biogenesis

(2021) Helena M. Schnell et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Proteasome Control of [URE3] Prion Propagation by Degradation of Anti-Prion Proteins Cur1 and Btn2 in Saccharomyces cerevisiae

(2021) Herman K Edskes et al.   GENETICS

DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexes

(2020) Jonas Pfab et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PI31 Is an Adaptor Protein for Proteasome Transport in Axons and Required for Synaptic Development

(2019) Kai Liu et al.   DEVELOPMENTAL CELL

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

(2019) Dorothee Liebschner et al.   Acta Crystallographica Section D-Structural Biology

A Rare Variant Nonparametric Linkage Method for Nuclear and Extended Pedigrees with Application to Late-Onset Alzheimer Disease via WGS Data

(2019) Linhai Zhao et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Characterization of Fully Recombinant Human 20S and 20S-PA200 Proteasome Complexes

(2019) Ana Toste Rêgo et al.   MOLECULAR CELL

The proteasome regulator PI31 is required for protein homeostasis, synapse maintenance, and neuronal survival in mice

(2019) Adi Minis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and Function of the 26S Proteasome

(2018) Jared A.M. Bard et al.   Annual Review of Biochemistry

ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps

(2018) Tristan Ian Croll   Acta Crystallographica Section D-Structural Biology

Regulation of proteasome assembly and activity in health and disease

(2018) Adrien Rousseau et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

(2017) Ali Punjani et al.   NATURE METHODS

Developing an Acidic Residue Reactive and Sulfoxide-Containing MS-Cleavable Homobifunctional Cross-Linker for Probing Protein–Protein Interactions

(2016) Craig B. Gutierrez et al.   ANALYTICAL CHEMISTRY

Tmc1 Is a Dynamically Regulated Effector of the Rpn4 Proteotoxic Stress Response

(2016) Angel Guerra-Moreno et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

(2016) Haim Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome

(2016) Y. Shi et al.   SCIENCE

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors

(2015) Eva M. Huber et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Maturation of the proteasome core particle induces an affinity switch that controls regulatory particle association

(2015) Prashant S. Wani et al.   Nature Communications

Molecular and Cellular Roles of PI31 (PSMF1) Protein in Regulation of Proteasome Function

(2014) Xiaohua Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The FP domains of PI31 and Fbxo7 have the same protein fold but very different modes of protein–protein interaction

(2014) Jinsai Shang et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

N-Terminal α7 Deletion of the Proteasome 20S Core Particle Substitutes for Yeast PI31 Function

(2014) Hideki Yashiroda et al.   MOLECULAR AND CELLULAR BIOLOGY

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

(2014) Nils A Kulak et al.   NATURE METHODS

Molecular Architecture and Assembly of the Eukaryotic Proteasome

(2013) Robert J. Tomko et al.   Annual Review of Biochemistry

Proteasome Regulation by ADP-Ribosylation

(2013) Park F. Cho-Park et al.   CELL

ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function

(2013) Gershon Celniker et al.   ISRAEL JOURNAL OF CHEMISTRY

Cuz1/Ynl155w, a Zinc-dependent Ubiquitin-binding Protein, Protects Cells from Metalloid-induced Proteotoxicity

(2013) John Hanna et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Conserved Protein with AN1 Zinc Finger and Ubiquitin-like Domains Modulates Cdc48 (p97) Function in the Ubiquitin-Proteasome Pathway

(2013) Bebiana Sá-Moura et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Collaboration gets the most out of software

(2013) Andrew Morin et al.   eLife

Fub1p, a novel protein isolated by boundary screening, binds the proteasome complex

(2012) Akira Hatanaka et al.   GENES & GENETIC SYSTEMS

Spg5 Protein Regulates the Proteasome in Quiescence

(2012) John Hanna et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Characterization of a new series of non-covalent proteasome inhibitors with exquisite potency and selectivity for the 20S β5-subunit

(2010) Christopher Blackburn et al.   BIOCHEMICAL JOURNAL

Development of a Novel Cross-linking Strategy for Fast and Accurate Identification of Cross-linked Peptides of Protein Complexes

(2010) Athit Kao et al.   MOLECULAR & CELLULAR PROTEOMICS

Structure of a Blm10 Complex Reveals Common Mechanisms for Proteasome Binding and Gate Opening

(2010) Kianoush Sadre-Bazzaz et al.   MOLECULAR CELL

Structure of a Conserved Dimerization Domain within the F-box Protein Fbxo7 and the PI31 Proteasome Inhibitor

(2008) Rebecca Kirk et al.   JOURNAL OF BIOLOGICAL CHEMISTRY