Metagenomics reveals divergent functional profiles of soil carbon and nitrogen cycling under long-term addition of chemical and organic fertilizers in the black soil region

A source of isotopically light organic carbon in a low-pH anoxic marine zone

(2021) Cristian A. Vargas et al.   Nature Communications

Metagenomics reveals taxon-specific responses of the nitrogen-cycling microbial community to long-term nitrogen fertilization

(2021) Ruibo Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species

(2021) Charlene N. Kelly et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of Organic Fertilizers on the Soil Microorganisms Responsible for N2O Emissions: A Review

(2021) Cristina Lazcano et al.   Microorganisms

The effects of nitrogen addition on soil organic carbon decomposition and microbial C-degradation functional genes abundance in a Pinus tabulaeformis forest

(2021) Hang Jing et al.   FOREST ECOLOGY AND MANAGEMENT

Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses

(2021) Bing-Bing Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

The combined effect of short-term hydrological and N-fertilization manipulation of wetlands on CO2, CH4, and N2O emissions

(2021) Giuditta Bonetti et al.   ENVIRONMENTAL POLLUTION

Functional potential differences between Firmicutes and Proteobacteria in response to manure amendment in a reclaimed soil

(2020) Wenxi Li et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Diverse nitrogen cycling pathways across a marine oxygen gradient indicate nitrogen loss coupled to chemoautotrophic activity

(2020) Elizabeth A. Suter et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial succession during the transition from active to inactive stages of deep-sea hydrothermal vent sulfide chimneys

(2020) Jialin Hou et al.   Microbiome

Soil Carbon, Nitrogen, and Phosphorus Cycling Microbial Populations and Their Resistance to Global Change Depend on Soil C:N:P Stoichiometry

(2020) Gongwen Luo et al.   mSystems

Excessive nitrogen addition accelerates N assimilation and P utilization by enhancing organic carbon decomposition in a Tibetan alpine steppe

(2020) Qiuyu Chen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Fertilization strategies affect soil properties and abundance of N-cycling functional genes in an acidic agricultural soil

(2020) Wen Xing Li et al.   APPLIED SOIL ECOLOGY

High temperatures enhance the microbial genetic potential to recycle C and N from necromass in high‐mountain soils

(2020) Johanna Donhauser et al.   GLOBAL CHANGE BIOLOGY

Stoichiometric controls of soil carbon and nitrogen cycling after long-term nitrogen and phosphorus addition in a mesic grassland in South Africa

(2019) Per-Marten Schleuss et al.   SOIL BIOLOGY & BIOCHEMISTRY

Molecular insights into the inhibitory effect of nitrogen fertilization on manure decomposition

(2019) Zengming Chen et al.   GEODERMA

Revealing the nutrient limitation and cycling for microbes under forest management practices in the Loess Plateau – Ecological stoichiometry

(2019) Jiaoyang Zhang et al.   GEODERMA

Chronic effects of different fertilization regimes on nirS-type denitrifier communities across the black soil region of Northeast China

(2019) Xiaojing HU et al.   PEDOSPHERE

Ecoenzymatic stoichiometry reveals microbial phosphorus limitation decreases the nitrogen cycling potential of soils in semi-arid agricultural ecosystems

(2019) Yongxing Cui et al.   SOIL & TILLAGE RESEARCH

The soil microbiome — from metagenomics to metaphenomics

(2018) Janet K Jansson et al.   CURRENT OPINION IN MICROBIOLOGY

Long-term nitrogen fertilization decreases bacterial diversity and favors the growth of Actinobacteria and Proteobacteria in agro-ecosystems across the globe

(2018) Zhongmin Dai et al.   GLOBAL CHANGE BIOLOGY

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Long-term fertilization regimes drive the abundance and composition of N-cycling-related prokaryotic groups via soil particle-size differentiation

(2018) Gongwen Luo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil biological responses to C, N and P fertilization in a polar desert of Antarctica

(2018) Becky A. Ball et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen addition increases the contents of glomalin-related soil protein and soil organic carbon but retains aggregate stability in a Pinus tabulaeformis forest

(2018) Lipeng Sun et al.   PeerJ

Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil

(2018) Qiuming Yao et al.   Nature Ecology & Evolution

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Effect of nitrogen fertilization on the abundance of nitrogen cycling genes in agricultural soils: A meta-analysis of field studies

(2018) Yang Ouyang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil Bacterial Communities Under Different Long-Term Fertilization Regimes in Three Locations Across the Black Soil Region of Northeast China

(2018) Xiaojing HU et al.   PEDOSPHERE

Response of soil microbial communities and nitrogen thresholds of Bothriochloa ischaemum to short-term nitrogen addition on the Loess Plateau

(2017) Jiaoyang Zhang et al.   GEODERMA

Evident variations of fungal and actinobacterial cellulolytic communities associated with different humified particle-size fractions in a long-term fertilizer experiment

(2017) Qian Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters

(2017) Xiaofen Wu et al.   Microbiome

Soil nitrous oxide emissions in forage systems fertilized with liquid dairy manure and inorganic fertilizers

(2016) Cristina Lazcano et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Nitrogen mineralization as a result of phosphorus supplementation in long-term phosphate deficient soil

(2016) Yan Chen et al.   APPLIED SOIL ECOLOGY

Nitrogen and phosphorus co-limitation and grazing moderate nitrogen impacts on plant growth and nutrient cycling in sand dune grassland

(2016) Hilary Ford et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effects of long-term application of chemical and organic fertilizers on the abundance of microbial communities involved in the nitrogen cycle

(2015) Ruibo Sun et al.   APPLIED SOIL ECOLOGY

Significant alteration of soil bacterial communities and organic carbon decomposition by different long-term fertilization management conditions of extremely low-productivity arable soil in South China

(2015) Weibing Xun et al.   ENVIRONMENTAL MICROBIOLOGY

Beyond nitrogen: The importance of phosphorus for CH 4 oxidation in soils and sediments

(2015) Annelies J. Veraart et al.   GEODERMA

Managing nitrogen for sustainable development

(2015) Xin Zhang et al.   NATURE

Stronger warming effects on microbial abundances in colder regions

(2015) Ji Chen et al.   Scientific Reports

Specific microbial gene abundances and soil parameters contribute to C, N, and greenhouse gas process rates after land use change in Southern Amazonian Soils

(2015) Daniel R. Lammel et al.   Frontiers in Microbiology

Xander: employing a novel method for efficient gene-targeted metagenomic assembly

(2015) Qiong Wang et al.   Microbiome

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems

(2014) Christos Gougoulias et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Biofertilizers function as key player in sustainable agriculture by improving soil fertility, plant tolerance and crop productivity

(2014) Deepak Bhardwaj et al.   Microbial Cell Factories

Decoupling of soil microbes and plants with increasing anthropogenic nitrogen inputs in a temperate steppe

(2014) Weixing Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen and phosphorus addition impact soil N2O emission in a secondary tropical forest of South China

(2014) Faming Wang et al.   Scientific Reports

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

(2013) Marti J. Anderson et al.   ECOLOGICAL MONOGRAPHS

Microbial phototrophic fixation of atmospheric CO2 in China subtropical upland and paddy soils

(2013) Tida Ge et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Overview of Mollisols in the world: Distribution, land use and management

(2012) Xiaobing Liu et al.   CANADIAN JOURNAL OF SOIL SCIENCE

Immediate effects of nitrogen, phosphorus, and potassium amendments on the methanotrophic activity and abundance in a Chinese paddy soil under short-term incubation experiment

(2012) Yong Zheng et al.   JOURNAL OF SOILS AND SEDIMENTS

Mineral fertilizer alters cellulolytic community structure and suppresses soil cellobiohydrolase activity in a long-term fertilization experiment

(2012) Fenliang Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

Effect of compost, nitrogen salts, and NPK fertilizers on methane oxidation potential at different temperatures

(2011) Louis-B. Jugnia et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations

(2010) Brian B Oakley et al.   ISME Journal

Effect of nitrogen fertilization on methane oxidation, abundance, community structure and gene expression of methanotrophs in the rice rhizosphere

(2010) Minita Shrestha et al.   ISME Journal

Significant Acidification in Major Chinese Croplands

(2010) J. H. Guo et al.   SCIENCE

Combined inorganic/organic fertilization enhances N efficiency and increases rice productivity through organic carbon accumulation in a rice paddy from the Tai Lake region, China

(2009) Genxing Pan et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Role of microbial populations in the release of reduced iron to the water column from marine aggregates

(2009) S Balzano et al.   AQUATIC MICROBIAL ECOLOGY

The effects of mineral fertilizer and organic manure on soil microbial community and diversity

(2009) Wenhui Zhong et al.   PLANT AND SOIL

Molecular Characterization of the Diversity and Distribution of a Thermal Spring Microbial Community by Using rRNA and Metabolic Genes

(2008) J. R. Hall et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Biogeography: From Taxonomy to Traits

(2008) J. L. Green et al.   SCIENCE

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE