Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield

(2016) Valerie Hubalek et al.   ISME Journal

Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock

(2016) Alexandre Bagnoud et al.   Nature Communications

Radiolytic Hydrogen Production in the Subseafloor Basaltic Aquifer

(2016) Mary E. Dzaugis et al.   Frontiers in Microbiology

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations

(2015) Xiaofen Wu et al.   ISME Journal

Quorum sensing-regulated chitin metabolism provides grazing resistance to Vibrio cholerae biofilms

(2015) Shuyang Sun et al.   ISME Journal

Motility, Chemotaxis and Aerotaxis Contribute to Competitiveness during Bacterial Pellicle Biofilm Development

(2015) Theresa Hölscher et al.   JOURNAL OF MOLECULAR BIOLOGY

Pseudomonas aeruginosa PAO1 exopolysaccharides are important for mixed species biofilm community development and stress tolerance

(2015) Saravanan Periasamy et al.   Frontiers in Microbiology

Extracellular Polymeric Substance Architecture Influences Natural Genetic Transformation of Acinetobacter baylyi in Biofilms

(2014) Robin T. Merod et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Hydrogeochemical characterisation and modelling of groundwaters in a potential geological repository for spent nuclear fuel in crystalline rocks (Laxemar, Sweden)

(2014) María J. Gimeno et al.   APPLIED GEOCHEMISTRY

Sampling and Characterizing Rare Earth Elements in Groundwater in Deep-Lying Fractures in Granitoids Under In Situ High-Pressure and Low-Redox Conditions

(2014) Linda J. Alakangas et al.   AQUATIC GEOCHEMISTRY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

REE and Y in groundwater in the upper 1.2 km of Proterozoic granitoids (Eastern Sweden) – Assessing the role of composition and origin of groundwaters, geochemistry of fractures, and organic/inorganic aqueous complexation

(2014) Frédéric A. Mathurin et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

High cesium concentrations in groundwater in the upper 1.2km of fractured crystalline rock – Influence of groundwater origin and secondary minerals

(2014) Frédéric A. Mathurin et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Sulphate-controlled Diversity of Subterranean Microbial Communities over Depth in Deep Groundwater with Opposing Gradients of Sulphate and Methane

(2014) Karsten Pedersen et al.   GEOMICROBIOLOGY JOURNAL

From deep-sea volcanoes to human pathogens: a conserved quorum-sensing signal in Epsilonproteobacteria

(2014) Ileana Pérez-Rodríguez et al.   ISME Journal

Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed

(2014) Jennifer D Rocca et al.   ISME Journal

Heterotrophic Communities Supplied by Ancient Organic Carbon Predominate in Deep Fennoscandian Bedrock Fluids

(2014) Lotta Purkamo et al.   MICROBIAL ECOLOGY

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

Weighing the deep continental biosphere

(2013) Sean McMahon et al.   FEMS MICROBIOLOGY ECOLOGY

The Role of Bacterial Biofilms and Surface Components in Plant-Bacterial Associations

(2013) Pablo Bogino et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield

(2013) Mari Nyyssönen et al.   ISME Journal

The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth

(2012) Katrina J. Edwards et al.   Annual Review of Earth and Planetary Sciences

Effect of Tunnel Excavation on Source and Mixing of Groundwater in a Coastal Granitoidic Fracture Network

(2012) Frédéric A. Mathurin et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Influence of H2and O2on sulphate-reducing activity of a subterranean community and the coupled response in redox potential

(2012) Karsten Pedersen   FEMS MICROBIOLOGY ECOLOGY

Subterranean microbial populations metabolize hydrogen and acetate under in situ conditions in granitic groundwater at 450 m depth in the Äspö Hard Rock Laboratory, Sweden

(2012) Karsten Pedersen   FEMS MICROBIOLOGY ECOLOGY

Metabolic activity of subterranean microbial communities in deep granitic groundwater supplemented with methane and H2

(2012) Karsten Pedersen   ISME Journal

Microbial communities in the subglacial waters of the Vatnajökull ice cap, Iceland

(2012) Viggó Thór Marteinsson et al.   ISME Journal

Sticky Situations: Key Components That Control Bacterial Surface Attachment

(2012) O. E. Petrova et al.   JOURNAL OF BACTERIOLOGY

Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1

(2012) Juan Liu et al.   Frontiers in Microbiology

Ray Meta: scalable de novo metagenome assembly and profiling

(2012) Sébastien Boisvert et al.   GENOME BIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Characterization of bacterial diversity to a depth of 1500 m in the Outokumpu deep borehole, Fennoscandian Shield

(2011) Merja Itävaara et al.   FEMS MICROBIOLOGY ECOLOGY

Large Scale Library Generation for High Throughput Sequencing

(2011) Erik Borgström et al.   PLoS One

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Sulfuricella denitrificans gen. nov., sp. nov., a sulfur-oxidizing autotroph isolated from a freshwater lake

(2010) H. Kojima et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Abundance and Diversity of Biofilms in Natural and Artificial Aquifers of the Äspö Hard Rock Laboratory, Sweden

(2010) Sara Jägevall et al.   MICROBIAL ECOLOGY

Increased Throughput by Parallelization of Library Preparation for Massive Sequencing

(2010) Sverker Lundin et al.   PLoS One

Detecting the near-surface redox front in crystalline bedrock using fracture mineral distribution, geochemistry and U-series disequilibrium

(2009) Henrik Drake et al.   APPLIED GEOCHEMISTRY

Bacterial adhesion: From mechanism to control

(2009) Katsutoshi Hori et al.   BIOCHEMICAL ENGINEERING JOURNAL

Bacteriophage lytic to Desulfovibrio aespoeensis isolated from deep groundwater

(2009) Hallgerd S C Eydal et al.   ISME Journal

Site descriptive modelling during characterization for a geological repository for nuclear waste in Sweden

(2008) A. Ström et al.   APPLIED GEOCHEMISTRY

Understanding groundwater chemistry using mixing models

(2008) Marcus Laaksoharju et al.   APPLIED GEOCHEMISTRY

Characterization of microbial processes in deep aquifers of the Fennoscandian Shield

(2008) Lotta Hallbeck et al.   APPLIED GEOCHEMISTRY

Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory, Sweden

(2008) Jennifer E Kyle et al.   ISME Journal

Distinguished multiple events of fracture mineralisation related to far-field orogenic effects in Paleoproterozoic crystalline rocks, Simpevarp area, SE Sweden

(2008) Henrik Drake et al.   LITHOS